FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1576, 145 aa
  1>>>pF1KE1576 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1258+/-0.00023; mu= 13.9609+/- 0.015
 mean_var=78.1300+/-15.501, 0's: 0 Z-trim(123.0): 32  B-trim: 57 in 1/57
 Lambda= 0.145099
 statistics sampled from 42068 (42108) to 42068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.494), width:  16
 Scan time:  5.760

The best scores are:                                      opt bits E(85289)
NP_009059 (OMIM: 605141) immunoglobulin iota chain ( 145) 1023 222.1 2.5e-58
NP_001290438 (OMIM: 605141) immunoglobulin iota ch ( 144)  888 193.8   8e-50
NP_037510 (OMIM: 605017) pre-B lymphocyte protein  ( 123)  288 68.2 4.6e-12


>>NP_009059 (OMIM: 605141) immunoglobulin iota chain iso  (145 aa)
 initn: 1023 init1: 1023 opt: 1023  Z-score: 1168.2  bits: 222.1 E(85289): 2.5e-58
Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
               70        80        90       100       110       120

              130       140     
pF1KE1 SSEKEEREREWEEEMEPTAARTRVP
       :::::::::::::::::::::::::
NP_009 SSEKEEREREWEEEMEPTAARTRVP
              130       140     

>>NP_001290438 (OMIM: 605141) immunoglobulin iota chain   (144 aa)
 initn: 888 init1: 888 opt: 888  Z-score: 1015.5  bits: 193.8 E(85289): 8e-50
Smith-Waterman score: 888; 91.5% identity (92.3% similar) in 142 aa overlap (4-145:3-144)

               10        20        30        40        50        60
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
          ::   .:   :     :::::::::::::::::::::::::::::::::::::::::
NP_001  MSAPCPGLLSCSCCLSTAQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
      60        70        80        90       100       110         

              130       140     
pF1KE1 SSEKEEREREWEEEMEPTAARTRVP
       :::::::::::::::::::::::::
NP_001 SSEKEEREREWEEEMEPTAARTRVP
     120       130       140    

>>NP_037510 (OMIM: 605017) pre-B lymphocyte protein 3 pr  (123 aa)
 initn: 272 init1: 236 opt: 288  Z-score: 337.6  bits: 68.2 E(85289): 4.6e-12
Smith-Waterman score: 288; 47.0% identity (67.0% similar) in 100 aa overlap (20-118:19-118)

               10        20        30        40         50         
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDH-DIGVYSVYWYQQ
                          : :: :  :.    : . .:.:::  .:  :  :.: ::::
NP_037  MACRCLSFLLMGTFLSVSQTVLAQLDALLVFPGQVAQLSCTLSPQHVTIRDYGVSWYQQ
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KE1 RPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGA
       : :  ::.:: : :. :. .  ..: :::..:: :.:   :.:: .::::.: :::..: 
NP_037 RAGSAPRYLLYYRSEEDHHRPADIPDRFSAAKDEAHNACVLTISPVQPEDDADYYCSVGY
      60        70        80        90       100       110         

     120       130       140     
pF1KE1 RSSEKEEREREWEEEMEPTAARTRVP
                                 
NP_037 GFSP                      
     120                         




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:32:42 2016 done: Mon Nov  7 03:32:43 2016
 Total Scan time:  5.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]