FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1576, 145 aa
  1>>>pF1KE1576 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3956+/-0.000501; mu= 12.5356+/- 0.030
 mean_var=75.6684+/-15.015, 0's: 0 Z-trim(115.7): 27  B-trim: 7 in 1/52
 Lambda= 0.147441
 statistics sampled from 16285 (16311) to 16285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.501), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS13798.1 VPREB1 gene_id:7441|Hs108|chr22        ( 145) 1023 225.4 9.5e-60
CCDS77657.1 VPREB1 gene_id:7441|Hs108|chr22        ( 144)  888 196.7 4.2e-51
CCDS13813.1 VPREB3 gene_id:29802|Hs108|chr22       ( 123)  288 69.0 9.7e-13


>>CCDS13798.1 VPREB1 gene_id:7441|Hs108|chr22             (145 aa)
 initn: 1023 init1: 1023 opt: 1023  Z-score: 1186.1  bits: 225.4 E(32554): 9.5e-60
Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
               70        80        90       100       110       120

              130       140     
pF1KE1 SSEKEEREREWEEEMEPTAARTRVP
       :::::::::::::::::::::::::
CCDS13 SSEKEEREREWEEEMEPTAARTRVP
              130       140     

>>CCDS77657.1 VPREB1 gene_id:7441|Hs108|chr22             (144 aa)
 initn: 888 init1: 888 opt: 888  Z-score: 1031.0  bits: 196.7 E(32554): 4.2e-51
Smith-Waterman score: 888; 91.5% identity (92.3% similar) in 142 aa overlap (4-145:3-144)

               10        20        30        40        50        60
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
          ::   .:   :     :::::::::::::::::::::::::::::::::::::::::
CCDS77  MSAPCPGLLSCSCCLSTAQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR
      60        70        80        90       100       110         

              130       140     
pF1KE1 SSEKEEREREWEEEMEPTAARTRVP
       :::::::::::::::::::::::::
CCDS77 SSEKEEREREWEEEMEPTAARTRVP
     120       130       140    

>>CCDS13813.1 VPREB3 gene_id:29802|Hs108|chr22            (123 aa)
 initn: 272 init1: 236 opt: 288  Z-score: 342.2  bits: 69.0 E(32554): 9.7e-13
Smith-Waterman score: 288; 47.0% identity (67.0% similar) in 100 aa overlap (20-118:19-118)

               10        20        30        40         50         
pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDH-DIGVYSVYWYQQ
                          : :: :  :.    : . .:.:::  .:  :  :.: ::::
CCDS13  MACRCLSFLLMGTFLSVSQTVLAQLDALLVFPGQVAQLSCTLSPQHVTIRDYGVSWYQQ
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KE1 RPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGA
       : :  ::.:: : :. :. .  ..: :::..:: :.:   :.:: .::::.: :::..: 
CCDS13 RAGSAPRYLLYYRSEEDHHRPADIPDRFSAAKDEAHNACVLTISPVQPEDDADYYCSVGY
      60        70        80        90       100       110         

     120       130       140     
pF1KE1 RSSEKEEREREWEEEMEPTAARTRVP
                                 
CCDS13 GFSP                      
     120                         




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:32:42 2016 done: Mon Nov  7 03:32:42 2016
 Total Scan time:  1.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]