FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1572, 860 aa
  1>>>pF1KE1572 860 - 860 aa - 860 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7084+/-0.00105; mu= 18.1383+/- 0.063
 mean_var=65.8408+/-13.213, 0's: 0 Z-trim(103.3): 22  B-trim: 0 in 0/46
 Lambda= 0.158062
 statistics sampled from 7342 (7352) to 7342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.226), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS2067.1 TGFBRAP1 gene_id:9392|Hs108|chr2        ( 860) 5694 1308.0       0


>>CCDS2067.1 TGFBRAP1 gene_id:9392|Hs108|chr2             (860 aa)
 initn: 5694 init1: 5694 opt: 5694  Z-score: 7009.0  bits: 1308.0 E(32554):    0
Smith-Waterman score: 5694; 100.0% identity (100.0% similar) in 860 aa overlap (1-860:1-860)

               10        20        30        40        50        60
pF1KE1 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 CLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGLGMFATVAGISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGLGMFATVAGISQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 RAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 AWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 AWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 LVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVID
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 KRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 QGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 AIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 AIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 RRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 RRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVH
              790       800       810       820       830       840

              850       860
pF1KE1 THCAASRHTNPSSSSPGTRT
       ::::::::::::::::::::
CCDS20 THCAASRHTNPSSSSPGTRT
              850       860




860 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:45:38 2016 done: Mon Nov  7 00:45:39 2016
 Total Scan time:  3.910 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]