FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1571, 260 aa
  1>>>pF1KE1571 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1115+/-0.000729; mu= 12.9977+/- 0.044
 mean_var=124.9720+/-24.310, 0's: 0 Z-trim(114.5): 42  B-trim: 43 in 1/50
 Lambda= 0.114728
 statistics sampled from 15044 (15086) to 15044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.463), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS8545.1 CD27 gene_id:939|Hs108|chr12            ( 260) 1923 328.5 2.8e-90


>>CCDS8545.1 CD27 gene_id:939|Hs108|chr12                 (260 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1734.1  bits: 328.5 E(32554): 2.8e-90
Smith-Waterman score: 1923; 99.6% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS85 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCHYSCPREE
              190       200       210       220       230       240

              250       260
pF1KE1 EGSTIPIQEDYRKPEPACSP
       ::::::::::::::::::::
CCDS85 EGSTIPIQEDYRKPEPACSP
              250       260




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:43:29 2016 done: Mon Nov  7 01:43:29 2016
 Total Scan time:  2.600 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]