Result of FASTA (omim) for
pFN21AE1569
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1569, 87 aa
1>>>pF1KE1569 87 - 87 aa - 87 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5438+/-0.000304; mu= 11.8079+/- 0.019
mean_var=48.0645+/- 9.591, 0's: 0 Z-trim(115.7): 7 B-trim: 231 in 1/53
Lambda= 0.184996
statistics sampled from 26311 (26318) to 26311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.309), width: 16
Scan time: 4.340
The best scores are: opt bits E(85289)
NP_004097 (OMIM: 147139) high affinity immunoglobu ( 86) 529 148.0 1.8e-36
NP_000725 (OMIM: 186780,610163) T-cell surface gly ( 163) 166 51.3 4.4e-07
NP_932170 (OMIM: 186780,610163) T-cell surface gly ( 164) 166 51.3 4.4e-07
XP_011508447 (OMIM: 186780,610163) PREDICTED: T-ce ( 171) 158 49.2 2e-06
XP_011508446 (OMIM: 186780,610163) PREDICTED: T-ce ( 172) 158 49.2 2e-06
XP_016858290 (OMIM: 186780,610163) PREDICTED: T-ce ( 194) 156 48.7 3.2e-06
XP_016858289 (OMIM: 186780,610163) PREDICTED: T-ce ( 195) 156 48.7 3.2e-06
>>NP_004097 (OMIM: 147139) high affinity immunoglobulin (86 aa)
initn: 323 init1: 297 opt: 529 Z-score: 776.0 bits: 148.0 E(85289): 1.8e-36
Smith-Waterman score: 529; 98.9% identity (98.9% similar) in 87 aa overlap (1-87:1-86)
10 20 30 40 50 60
pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYCRLKVIQVRKAAITSYE
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
NP_004 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYCRLK-IQVRKAAITSYE
10 20 30 40 50
70 80
pF1KE1 KSDGVYTGLSTRNQETYETLKHEKPPQ
:::::::::::::::::::::::::::
NP_004 KSDGVYTGLSTRNQETYETLKHEKPPQ
60 70 80
>>NP_000725 (OMIM: 186780,610163) T-cell surface glycopr (163 aa)
initn: 170 init1: 114 opt: 166 Z-score: 248.2 bits: 51.3 E(85289): 4.4e-07
Smith-Waterman score: 166; 33.3% identity (71.3% similar) in 87 aa overlap (1-84:6-90)
10 20 30 40 50
pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKVIQVRK
.. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.: :.
NP_000 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKF--SRS
10 20 30 40 50
60 70 80
pF1KE1 AAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
: .:..... .:. :. .: :..: ...
NP_000 ADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKM
60 70 80 90 100 110
NP_000 AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160
>>NP_932170 (OMIM: 186780,610163) T-cell surface glycopr (164 aa)
initn: 170 init1: 114 opt: 166 Z-score: 248.2 bits: 51.3 E(85289): 4.4e-07
Smith-Waterman score: 166; 33.3% identity (71.3% similar) in 87 aa overlap (1-84:6-90)
10 20 30 40 50
pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKVIQVRK
.. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.: :.
NP_932 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKF--SRS
10 20 30 40 50
60 70 80
pF1KE1 AAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
: .:..... .:. :. .: :..: ...
NP_932 ADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDK
60 70 80 90 100 110
NP_932 MAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160
>>XP_011508447 (OMIM: 186780,610163) PREDICTED: T-cell s (171 aa)
initn: 170 init1: 114 opt: 158 Z-score: 236.3 bits: 49.2 E(85289): 2e-06
Smith-Waterman score: 158; 36.5% identity (74.3% similar) in 74 aa overlap (14-84:27-98)
10 20 30 40
pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCR
:.: ..: .:.:::.::.:::.::..:: :. :
XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
10 20 30 40 50 60
50 60 70 80
pF1KE1 LKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
.: :.: .:..... .:. :. .: :..: ...
XP_011 VKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLY
70 80 90 100 110
XP_011 NELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160 170
>>XP_011508446 (OMIM: 186780,610163) PREDICTED: T-cell s (172 aa)
initn: 170 init1: 114 opt: 158 Z-score: 236.3 bits: 49.2 E(85289): 2e-06
Smith-Waterman score: 158; 36.5% identity (74.3% similar) in 74 aa overlap (14-84:27-98)
10 20 30 40
pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCR
:.: ..: .:.:::.::.:::.::..:: :. :
XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
10 20 30 40 50 60
50 60 70 80
pF1KE1 LKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
.: :.: .:..... .:. :. .: :..: ...
XP_011 VKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGL
70 80 90 100 110
XP_011 YNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160 170
>>XP_016858290 (OMIM: 186780,610163) PREDICTED: T-cell s (194 aa)
initn: 170 init1: 114 opt: 156 Z-score: 232.6 bits: 48.7 E(85289): 3.2e-06
Smith-Waterman score: 156; 36.6% identity (74.6% similar) in 71 aa overlap (15-84:53-121)
10 20 30 40
pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYC
:. .: .:.:::.::.:::.::..:: :.
XP_016 LPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDPKLCYLLDGILFIYGVILTALFL
30 40 50 60 70 80
50 60 70 80
pF1KE1 RLKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
:.: :.: .:..... .:. :. .: :..: ...
XP_016 RVKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGL
90 100 110 120 130 140
XP_016 YNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
150 160 170 180 190
>>XP_016858289 (OMIM: 186780,610163) PREDICTED: T-cell s (195 aa)
initn: 170 init1: 114 opt: 156 Z-score: 232.6 bits: 48.7 E(85289): 3.2e-06
Smith-Waterman score: 156; 36.6% identity (74.6% similar) in 71 aa overlap (15-84:53-121)
10 20 30 40
pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYC
:. .: .:.:::.::.:::.::..:: :.
XP_016 LPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDPKLCYLLDGILFIYGVILTALFL
30 40 50 60 70 80
50 60 70 80
pF1KE1 RLKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ
:.: :.: .:..... .:. :. .: :..: ...
XP_016 RVKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEG
90 100 110 120 130 140
XP_016 LYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
150 160 170 180 190
87 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:58:30 2016 done: Sun Nov 6 23:58:31 2016
Total Scan time: 4.340 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]