Result of FASTA (omim) for
pFN21AE1561
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1561, 98 aa
1>>>pF1KE1561 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3681+/-0.000246; mu= 14.3373+/- 0.015
mean_var=55.3023+/-10.871, 0's: 0 Z-trim(121.6): 65 B-trim: 3 in 1/55
Lambda= 0.172466
statistics sampled from 38449 (38526) to 38449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.452), width: 16
Scan time: 4.620
The best scores are: opt bits E(85289)
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 665 172.1 1.3e-43
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 231 64.2 5.1e-11
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 231 64.3 5.4e-11
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 186 52.9 9.2e-08
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 186 52.9 9.2e-08
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 184 52.4 1.3e-07
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 184 52.4 1.3e-07
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 184 52.4 1.3e-07
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 186 53.1 1.3e-07
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 175 50.2 6e-07
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 175 50.2 6e-07
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 170 48.9 1.4e-06
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 170 48.9 1.4e-06
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 170 48.9 1.5e-06
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 168 48.5 2.1e-06
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 164 47.4 3.9e-06
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 164 47.4 4e-06
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 160 46.5 9.4e-06
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 158 46.1 1.5e-05
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 155 45.3 2.3e-05
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 155 45.3 2.3e-05
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 154 45.0 2.8e-05
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 150 44.0 5.5e-05
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 150 44.0 5.5e-05
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 150 44.0 5.5e-05
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 144 42.5 0.00013
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 144 42.5 0.00013
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 144 42.6 0.00016
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 144 42.6 0.00016
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 141 41.7 0.00021
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 140 41.5 0.00027
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 138 41.0 0.00034
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 138 41.0 0.00038
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 137 40.8 0.00048
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 134 40.0 0.00074
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 132 39.6 0.0012
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 131 39.3 0.0014
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 131 39.3 0.0014
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 128 38.6 0.0024
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 122 37.1 0.0066
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 119 36.3 0.01
>>NP_006265 (OMIM: 602227) C-C motif chemokine 19 precur (98 aa)
initn: 665 init1: 665 opt: 665 Z-score: 904.2 bits: 172.1 E(85289): 1.3e-43
Smith-Waterman score: 665; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)
10 20 30 40 50 60
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAV
10 20 30 40 50 60
70 80 90
pF1KE1 VFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
::::::::::::::::::::::::::::::::::::::
NP_006 VFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
70 80 90
>>NP_002980 (OMIM: 602737) C-C motif chemokine 21 precur (134 aa)
initn: 231 init1: 132 opt: 231 Z-score: 318.8 bits: 64.2 E(85289): 5.1e-11
Smith-Waterman score: 231; 37.8% identity (67.3% similar) in 98 aa overlap (1-94:1-98)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTS-PAPTLSGTND-AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVP
:: ::::::.: . : .:.. :.::::. .:. ::. .::... . :: .:
NP_002 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIP
10 20 30 40 50 60
60 70 80 90
pF1KE1 AVVFTTLRGRQ--LCAPPDQPWVERIIQRLQRTSAKMKRRSS
:..: . : ::: : . ::....:.:..: . .:
NP_002 AILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSK
70 80 90 100 110 120
NP_002 GCKRTERSQTPKGP
130
>>XP_011516306 (OMIM: 602737) PREDICTED: C-C motif chemo (145 aa)
initn: 231 init1: 132 opt: 231 Z-score: 318.3 bits: 64.3 E(85289): 5.4e-11
Smith-Waterman score: 231; 37.8% identity (67.3% similar) in 98 aa overlap (1-94:1-98)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTS-PAPTLSGTND-AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVP
:: ::::::.: . : .:.. :.::::. .:. ::. .::... . :: .:
XP_011 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIP
10 20 30 40 50 60
60 70 80 90
pF1KE1 AVVFTTLRGRQ--LCAPPDQPWVERIIQRLQRTSAKMKRRSS
:..: . : ::: : . ::....:.:..: . .:
XP_011 AILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSK
70 80 90 100 110 120
XP_011 GCKSQPLTPLFCPHRTERSQTPKGP
130 140
>>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa)
initn: 166 init1: 103 opt: 186 Z-score: 260.3 bits: 52.9 E(85289): 9.2e-08
Smith-Waterman score: 186; 36.0% identity (68.6% similar) in 86 aa overlap (2-87:9-89)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKD
:.::: ::: : . : :.. .. ::.. ..::.: ::.... ..
XP_016 MMGLSLASAVLLA-SLLSLHLGTATR--GSDISKTCCFQYSHKPLPWTWVRSYEFT--SN
10 20 30 40 50
60 70 80 90
pF1KE1 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
.: ::.::: ::...:. : . ::.. :. :.
XP_016 SCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa)
initn: 166 init1: 103 opt: 186 Z-score: 260.3 bits: 52.9 E(85289): 9.2e-08
Smith-Waterman score: 186; 36.0% identity (68.6% similar) in 86 aa overlap (2-87:9-89)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKD
:.::: ::: : . : :.. .. ::.. ..::.: ::.... ..
NP_006 MMGLSLASAVLLA-SLLSLHLGTATR--GSDISKTCCFQYSHKPLPWTWVRSYEFT--SN
10 20 30 40 50
60 70 80 90
pF1KE1 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
.: ::.::: ::...:. : . ::.. :. :.
NP_006 SCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 174 init1: 112 opt: 184 Z-score: 257.8 bits: 52.4 E(85289): 1.3e-07
Smith-Waterman score: 184; 32.9% identity (65.9% similar) in 85 aa overlap (6-87:7-89)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTS---PAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCR
::..... :. :: . ..:. ::.. .:.: .... : : :
NP_002 MKVSAAALAVILIATALCAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGK--CS
10 20 30 40 50
60 70 80 90
pF1KE1 VPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
:::::.: ..::.:: :.. ::.. :. :.
NP_002 NPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 134 init1: 91 opt: 184 Z-score: 257.7 bits: 52.4 E(85289): 1.3e-07
Smith-Waterman score: 184; 34.5% identity (60.9% similar) in 87 aa overlap (1-87:8-90)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKD
.:.:: : . :: . : : ::.: :.. :: .. . :. ..
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTA--CCFSYTSRQIPQNFIAD--YFETSS
10 20 30 40 50
60 70 80 90
pF1KE1 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
: :.:.: : ::::.:: :.. ::.. .. :.
NP_066 QCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 134 init1: 91 opt: 184 Z-score: 257.7 bits: 52.4 E(85289): 1.3e-07
Smith-Waterman score: 184; 34.5% identity (60.9% similar) in 87 aa overlap (1-87:8-90)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKD
.:.:: : . :: . : : ::.: :.. :: .. . :. ..
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTA--CCFSYTSRQIPQNFIAD--YFETSS
10 20 30 40 50
60 70 80 90
pF1KE1 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
: :.:.: : ::::.:: :.. ::.. .. :.
NP_001 QCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa)
initn: 159 init1: 103 opt: 186 Z-score: 257.7 bits: 53.1 E(85289): 1.3e-07
Smith-Waterman score: 186; 36.0% identity (68.6% similar) in 86 aa overlap (2-87:63-143)
10 20 30
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCL
:.::: ::: : . : :.. .. ::.
XP_016 LIKGDQAGGVWEKPEKGLICSIMMGLSLASAVLLA-SLLSLHLGTATR--GSDISKTCCF
40 50 60 70 80
40 50 60 70 80 90
pF1KE1 SVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSA
. ..::.: ::.... ...: ::.::: ::...:. : . ::.. :. :.
XP_016 QYSHKPLPWTWVRSYEFT--SNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQ
90 100 110 120 130 140
pF1KE1 KMKRRSS
XP_016 L
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 171 init1: 109 opt: 175 Z-score: 245.7 bits: 50.2 E(85289): 6e-07
Smith-Waterman score: 175; 37.9% identity (62.1% similar) in 87 aa overlap (7-87:8-90)
10 20 30 40 50
pF1KE1 MALLLALSLLVLWTSP-APTLS---GTNDAEDCCLSVTQKPIPGYIVRNF--HYLLIKD
::::.: .. .:.:: :.. ::.: : . .: ::: : ..
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLP----RNFVVDYYETSS
10 20 30 40 50
60 70 80 90
pF1KE1 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
: ::::: : :..:.:: :.. ::.. . :.
NP_002 LCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
98 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:34:17 2016 done: Sun Nov 6 22:34:18 2016
Total Scan time: 4.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]