FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1561, 98 aa
  1>>>pF1KE1561 98 - 98 aa - 98 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3623+/-0.000481; mu= 14.3552+/- 0.029
 mean_var=53.9724+/-10.562, 0's: 0 Z-trim(114.9): 46  B-trim: 0 in 0/51
 Lambda= 0.174577
 statistics sampled from 15386 (15436) to 15386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.474), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS6570.1 CCL19 gene_id:6363|Hs108|chr9           (  98)  665 174.0 1.3e-44
CCDS6571.1 CCL21 gene_id:6366|Hs108|chr9           ( 134)  231 64.8 1.4e-11


>>CCDS6570.1 CCL19 gene_id:6363|Hs108|chr9                (98 aa)
 initn: 665 init1: 665 opt: 665  Z-score: 914.2  bits: 174.0 E(32554): 1.3e-44
Smith-Waterman score: 665; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE1 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALLLALSLLVLWTSPAPTLSGTNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAV
               10        20        30        40        50        60

               70        80        90        
pF1KE1 VFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
       ::::::::::::::::::::::::::::::::::::::
CCDS65 VFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
               70        80        90        

>>CCDS6571.1 CCL21 gene_id:6366|Hs108|chr9                (134 aa)
 initn: 231 init1: 132 opt: 231  Z-score: 321.6  bits: 64.8 E(32554): 1.4e-11
Smith-Waterman score: 231; 37.8% identity (67.3% similar) in 98 aa overlap (1-94:1-98)

               10         20         30        40        50        
pF1KE1 MALLLALSLLVLWTS-PAPTLSGTND-AEDCCLSVTQKPIPGYIVRNFHYLLIKDGCRVP
       ::  ::::::.:  .   :  .:..  :.::::. .:. ::. .::...    . :: .:
CCDS65 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCSIP
               10        20        30        40        50        60

       60          70        80        90                          
pF1KE1 AVVFTTLRGRQ--LCAPPDQPWVERIIQRLQRTSAKMKRRSS                  
       :..:   .  :  ::: : . ::....:.:..: . .:                      
CCDS65 AILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSK
               70        80        90       100       110       120

CCDS65 GCKRTERSQTPKGP
              130    




98 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:34:17 2016 done: Sun Nov  6 22:34:17 2016
 Total Scan time:  1.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]