Result of FASTA (ccds) for
pFN21AE1556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1556, 460 aa
1>>>pF1KE1556 460 - 460 aa - 460 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4838+/-0.000918; mu= 17.4025+/- 0.055
mean_var=81.3048+/-15.947, 0's: 0 Z-trim(106.9): 32 B-trim: 83 in 2/47
Lambda= 0.142238
statistics sampled from 9258 (9275) to 9258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.285), width: 16
Scan time: 3.150
The best scores are: opt bits E(32554)
CCDS7593.1 GFRA1 gene_id:2674|Hs108|chr10 ( 460) 3134 653.0 1.9e-187
CCDS44481.1 GFRA1 gene_id:2674|Hs108|chr10 ( 465) 3114 648.9 3.2e-186
CCDS47816.1 GFRA2 gene_id:2675|Hs108|chr8 ( 464) 1436 304.5 1.5e-82
CCDS55208.1 GFRA2 gene_id:2675|Hs108|chr8 ( 359) 1114 238.4 9.3e-63
CCDS55207.1 GFRA2 gene_id:2675|Hs108|chr8 ( 331) 1033 221.7 8.8e-58
CCDS4201.1 GFRA3 gene_id:2676|Hs108|chr5 ( 400) 705 154.5 1.9e-37
CCDS13055.1 GFRA4 gene_id:64096|Hs108|chr20 ( 269) 670 147.2 2e-35
CCDS13056.1 GFRA4 gene_id:64096|Hs108|chr20 ( 299) 343 80.1 3.4e-15
CCDS4957.1 GFRAL gene_id:389400|Hs108|chr6 ( 394) 277 66.7 5.1e-11
>>CCDS7593.1 GFRA1 gene_id:2674|Hs108|chr10 (460 aa)
initn: 3134 init1: 3134 opt: 3134 Z-score: 3478.9 bits: 653.0 E(32554): 1.9e-187
Smith-Waterman score: 3134; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)
10 20 30 40 50 60
pF1KE1 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 YEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTTSVSND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTTSVSND
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNYEKEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNYEKEGL
370 380 390 400 410 420
430 440 450 460
pF1KE1 GASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS
::::::::::::::::::::::::::::::::::::::::
CCDS75 GASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS
430 440 450 460
>>CCDS44481.1 GFRA1 gene_id:2674|Hs108|chr10 (465 aa)
initn: 2207 init1: 2207 opt: 3114 Z-score: 3456.6 bits: 648.9 E(32554): 3.2e-186
Smith-Waterman score: 3114; 98.9% identity (98.9% similar) in 465 aa overlap (1-460:1-465)
10 20 30 40 50 60
pF1KE1 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSP
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 YEPVNSRLSDIFRVVPFIS-----VEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTT
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS44 YEPVNSRLSDIFRVVPFISDVFQQVEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 SVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 YIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPV
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 QTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNY
370 380 390 400 410 420
420 430 440 450 460
pF1KE1 EKEGLGASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS
:::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EKEGLGASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS
430 440 450 460
>>CCDS47816.1 GFRA2 gene_id:2675|Hs108|chr8 (464 aa)
initn: 1385 init1: 612 opt: 1436 Z-score: 1595.7 bits: 304.5 E(32554): 1.5e-82
Smith-Waterman score: 1436; 49.8% identity (75.5% similar) in 436 aa overlap (27-447:38-460)
10 20 30 40 50
pF1KE1 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGK
.:::.:.. : :..::..:::::::.::.
CCDS47 CLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ETNFSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSL-QGNDL
. : ::. ::..:.:.:... ::.:::::::::: .::.::::.. .: .:...
CCDS47 DRNTMLAN-----KECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LEDSPYEPVNSRLSDIFRVVPFIS---VEHI--PKGNNCLDAAKACNLDDICKKYRSAYI
: ::::::.::::::::.. ..: .. . :.:.::::::::::.: ::: ::.::
CCDS47 YEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYI
130 140 150 160 170 180
180 190 200 210 220
pF1KE1 TPCTTSVS-NDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS
. :. .: .. :::::::::::::::.::....: ::::::.: ::.:::::::.: ::
CCDS47 SICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE1 YEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIG
::..::::::.:. :.:...:::::::: .::. ..:.:: .:: :: .:.:.::
CCDS47 YEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE1 TVMTPNYIDSS--SLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVT
:::::.::: .. :.:::.: .::: ::: ::: : .: ::.:::::::::.::.
CCDS47 FDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE1 VWQPAFPVQTTTATTTTALRVKNKPLGPA--GSENEIPTHVLPPCANLQAQKLKSNVSGN
: .: : . .: : ::.. : : .. . . : :. :...: : ::.: : .
CCDS47 V-SPKGP----SFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKE
370 380 390 400 410
410 420 430 440 450 460
pF1KE1 THLCISNGNYEKEGLGASSHITTKSMAAP----PSCGLSPLLVLVVTALSTLLSLTETS
.:... . .. .:. . : ..: :: .:. : ::..
CCDS47 LSMCFTELT---TNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
420 430 440 450 460
>>CCDS55208.1 GFRA2 gene_id:2675|Hs108|chr8 (359 aa)
initn: 1059 init1: 612 opt: 1114 Z-score: 1240.2 bits: 238.4 E(32554): 9.3e-63
Smith-Waterman score: 1114; 49.4% identity (73.7% similar) in 350 aa overlap (112-447:14-355)
90 100 110 120 130
pF1KE1 KSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDSPYEPVNSRLSDIFRVVPFIS--
:... : ::::::.::::::::.. ..:
CCDS55 MILANVFCLFFFLGEEFYEASPYEPVTSRLSDIFRLASIFSGT
10 20 30 40
140 150 160 170 180 190
pF1KE1 -VEHI--PKGNNCLDAAKACNLDDICKKYRSAYITPCTTSVS-NDVCNRRKCHKALRQFF
.. . :.:.::::::::::.: ::: ::.::. :. .: .. ::::::::::::::
CCDS55 GADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFF
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE1 DKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRL
:.::....: ::::::.: ::.:::::::.: ::::..::::::.:. :.:...:::::
CCDS55 DRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRL
110 120 130 140 150 160
260 270 280 290 300 310
pF1KE1 ADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS--SLSVAPWCDCSNS
::: .::. ..:.:: .:: :: .:.:.:: :::::.::: .. :.:::.: .:
CCDS55 ADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGS
170 180 190 200 210 220
320 330 340 350 360 370
pF1KE1 GNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPL
:: ::: ::: : .: ::.:::::::::.::.: .: : . .: : ::.. :
CCDS55 GNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVNV-SPKGP----SFQATQAPRVEKTPS
230 240 250 260 270
380 390 400 410 420 430
pF1KE1 GPA--GSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNGNYEKEGLGASSHITTKSM
: .. . . : :. :...: : ::.: : . .:... .. .:. . :
CCDS55 LPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFTE---LTTNIIPGSNKVIKPN
280 290 300 310 320 330
440 450 460
pF1KE1 AAP----PSCGLSPLLVLVVTALSTLLSLTETS
..: :: .:. : ::..
CCDS55 SGPSRARPSAALTVLSVLMLKLAL
340 350
>>CCDS55207.1 GFRA2 gene_id:2675|Hs108|chr8 (331 aa)
initn: 960 init1: 612 opt: 1033 Z-score: 1150.8 bits: 221.7 E(32554): 8.8e-58
Smith-Waterman score: 1033; 48.0% identity (72.7% similar) in 333 aa overlap (128-447:3-327)
100 110 120 130 140 150
pF1KE1 NCLRIYWSMYQSLQGNDLLEDSPYEPVNSRLSDIFRVVPFISVEHIP----KGNNCLDAA
:...: . :... : :.:.:::::
CCDS55 MILANVFCLFFFLGTGADPVVSAKSNHCLDAA
10 20 30
160 170 180 190 200 210
pF1KE1 KACNLDDICKKYRSAYITPCTTSVS-NDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCR
:::::.: ::: ::.::. :. .: .. :::::::::::::::.::....: ::::::.
CCDS55 KACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQ
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE1 DIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSC
: ::.:::::::.: ::::..::::::.:. :.:...:::::::: .::. ..:.::
CCDS55 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSC
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE1 LKENYADCLLAYSGLIGTVMTPNYIDSS--SLSVAPWCDCSNSGNDLEECLKFLNFFKDN
.:: :: .:.:.:: :::::.::: .. :.:::.: .::: ::: ::: : .:
CCDS55 PADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTEN
160 170 180 190 200 210
340 350 360 370 380
pF1KE1 TCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGPA--GSENEIPTHVLP
::.:::::::::.::.: .: : . .: : ::.. : : .. . . : :.
CCDS55 PCLRNAIQAFGNGTDVNV-SPKGP----SFQATQAPRVEKTPSLPDDLSDSTSLGTSVIT
220 230 240 250 260
390 400 410 420 430 440
pF1KE1 PCANLQAQKLKSNVSGNTHLCISNGNYEKEGLGASSHITTKSMAAP----PSCGLSPLLV
:...: : ::.: : . .:... . .. .:. . : ..: :: .:. : :
CCDS55 TCTSVQEQGLKANNSKELSMCFTELT---TNIIPGSNKVIKPNSGPSRARPSAALTVLSV
270 280 290 300 310 320
450 460
pF1KE1 LVVTALSTLLSLTETS
:..
CCDS55 LMLKLAL
330
>>CCDS4201.1 GFRA3 gene_id:2676|Hs108|chr5 (400 aa)
initn: 500 init1: 207 opt: 705 Z-score: 785.9 bits: 154.5 E(32554): 1.9e-37
Smith-Waterman score: 705; 35.1% identity (61.1% similar) in 368 aa overlap (29-387:44-396)
10 20 30 40 50
pF1KE1 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKET
:..: .: . .::. :. : .:... :
CCDS42 VLMLLLLLPPSPLPLAAGDPLPTESRLMNSCLQARRKCQADPTCSAAYHHLDSCTSSIST
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE1 NF-SLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQ-GNDLL
. : .. : .: : . :...:: .: :.: ::.. :: :::..... . :: :
CCDS42 PLPSEEPSVPA--DCLEAAQQLRNSSLIGCMCHRRMKNQVACLDIYWTVHRARSLGNYEL
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE1 EDSPYEPVNSRLSDIFRVVPFISVEHI-PKGNNCLDAAKACNLDDICKKYRSAYITPCTT
. :::: .. : ... . ... . : .. :: : :.:.: : . :.:: :
CCDS42 DVSPYE--DTVTSKPWKM-NLSKLNMLKPDSDLCLKFAMLCTLNDKCDRLRKAYGEAC--
140 150 160 170 180
180 190 200 210 220 230
pF1KE1 SVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSC--RDIACTERRRQTIVPVCSYEER
:. :.:. : . : ::.:. :. :.:.: : : .: ::::.::.: :.
CCDS42 --SGPHCQRHVCLRQLLTFFEKAAEPHAQGLLLCPCAPNDRGCGERRRNTIAPNCALPPV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 EKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMT
::::.:. : .. .:::::.:: :.:.: . ...: :. . :: :: :::::.::
CCDS42 A-PNCLELRRLCFSDPLCRSRLVDFQTHCHPMD-ILGTCATEQ-SRCLRAYLGLIGTAMT
250 260 270 280 290 300
300 310 320 330 340
pF1KE1 PNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQA---FGNGSDVTVW-
::.... . ::: : : .::: ::: . .::. : :: .:: : : . :
CCDS42 PNFVSNVNTSVALSCTCRGSGNLQEECEMLEGFFSHNPCLTEAIAAKMRFHSQLFSQDWP
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE1 QPAFPVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLC
.:.: :.. . . :. .: :. .: .:
CCDS42 HPTFAVMAHQNENPA---VRPQPWVPSLFSCTLPLILLLSLW
370 380 390 400
410 420 430 440 450 460
pF1KE1 ISNGNYEKEGLGASSHITTKSMAAPPSCGLSPLLVLVVTALSTLLSLTETS
>>CCDS13055.1 GFRA4 gene_id:64096|Hs108|chr20 (269 aa)
initn: 766 init1: 370 opt: 670 Z-score: 749.5 bits: 147.2 E(32554): 2e-35
Smith-Waterman score: 670; 43.3% identity (67.6% similar) in 210 aa overlap (146-353:23-227)
120 130 140 150 160 170
pF1KE1 LEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTT
:: :.:::.::. : :.. :: :.. :
CCDS13 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLG
10 20 30 40 50
180 190 200 210 220 230
pF1KE1 SVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEER--
... : : .:..:::.:: . : ....::: : ::.::::::.:: :..
CCDS13 RAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGP
60 70 80 90 100 110
240 250 260 270 280 290
pF1KE1 EKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMT
:.::. . :. . .:: :: : ..: : . ..:: .. : :: ::.::.::..:
CCDS13 APPSCLEPLNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVT
120 130 140 150 160 170
300 310 320 330 340 350
pF1KE1 PNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAF
:::.:. : :::::::. ::: :.: : ..: : :: .:::::..: : :..
CCDS13 PNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG-----WPPVL
180 190 200 210 220
360 370 380 390 400 410
pF1KE1 PVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCISNG
CCDS13 LDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL
230 240 250 260
>>CCDS13056.1 GFRA4 gene_id:64096|Hs108|chr20 (299 aa)
initn: 644 init1: 307 opt: 343 Z-score: 386.2 bits: 80.1 E(32554): 3.4e-15
Smith-Waterman score: 493; 35.0% identity (56.7% similar) in 240 aa overlap (146-353:23-257)
120 130 140 150 160 170
pF1KE1 LEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTT
:: :.:::.::. : :.. :: :.. :
CCDS13 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLG
10 20 30 40 50
180 190 200 210 220 230
pF1KE1 SVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEER--
... : : .:..:::.:: . : ....::: : ::.::::::.:: :..
CCDS13 RAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGP
60 70 80 90 100 110
240 250 260 270 280
pF1KE1 EKPNCLNLQDSCKTNYICR-SRLA-----DFFTNCQPESRSVSSCLKENYADCLLAYS--
:.::. . :. . .:: .: : . . .: : .. . . :. :
CCDS13 APPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQ
120 130 140 150 160 170
290 300 310 320
pF1KE1 ---------------------GL-IGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKF
:. ::..::::.:. : :::::::. ::: :.: :
CCDS13 RPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAF
180 190 200 210 220 230
330 340 350 360 370 380
pF1KE1 LNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGPAGSENEIP
..: : :: .:::::..: : :..
CCDS13 RGLFTRNRCLDGAIQAFASG-----WPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLL
240 250 260 270 280
>>CCDS4957.1 GFRAL gene_id:389400|Hs108|chr6 (394 aa)
initn: 178 init1: 142 opt: 277 Z-score: 311.3 bits: 66.7 E(32554): 5.1e-11
Smith-Waterman score: 301; 20.7% identity (52.7% similar) in 338 aa overlap (6-333:2-317)
10 20 30 40 50
pF1KE1 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQS-CSTKYRTLRQCVAGKETN
. : . . : : : .. .:. .:::.. . :. .:.... : ....
CCDS49 MIVFIFLAMGLSLENEYTSQTN-NCTYLREQCLRDANGCKHAWRVMED--ACNDSD
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 FSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSLQGNDLLEDS
. .. .. : ... : .... .: : .. ..: :. .. :
CCDS49 PGDPCKMRNSSYCNLSIQYLVESNFQFKECL--------CTDDFYCTVNKLLGKKCINKS
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 PYEPVNSRLSDIFRVVPFISVEHIPKGN-NCLDAAKACNLDDICKKYRSAYITPCTTSVS
: . : :. .: :: .::..:.:: : .:. ..:. : :..
CCDS49 D----NVK-EDKFKWNLTTRSHHGFKGMWSCLEVAEACVGDVVCNAQLASYLKAC--SAN
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 NDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSC--RDIACTERRRQTIVPVCSYEEREKP
.. :. ..:. :.: :....: . . . ::.: :: : . .. .:. . :
CCDS49 GNPCDLKQCQAAIRFFYQNIPFNIAQMLAFCDCAQSDIPCQQSKEALHSKTCAVNMVPPP
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 NCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPN-
.::.. ::... .:: . : ..: .: . .: ... .:. . : : .
CCDS49 TCLSVIRSCQNDELCRRHYRTFQSKCW--QRVTRKCHEDE--NCISTLSKQDLTCSGSDD
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE1 ----YIDSSSLSVAPWCDCSNSGNDLEE-CLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQ
::: . . : : . .. : : : .... ..:.
CCDS49 CKAAYIDILGTVLQVQCTCRTITQSEESLCKIFQHMLHRKSCFNYPTLSNVKGMALYTRK
280 290 300 310 320 330
360 370 380 390 400 410
pF1KE1 PAFPVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCI
CCDS49 HANKITLTGFHSPFNGEVIYAAMCMTVTCGILLLVMVKLRTSRISSKARDPSSIQIPGEL
340 350 360 370 380 390
460 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:22:27 2016 done: Mon Nov 7 01:22:27 2016
Total Scan time: 3.150 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]