FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1555, 153 aa
  1>>>pF1KE1555 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8382+/-0.000718; mu= 14.9587+/- 0.044
 mean_var=63.9706+/-13.167, 0's: 0 Z-trim(108.9): 28  B-trim: 0 in 0/49
 Lambda= 0.160356
 statistics sampled from 10480 (10500) to 10480 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.323), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS2085.1 MALL gene_id:7851|Hs108|chr2            ( 153) 1003 239.9 4.5e-64
CCDS2006.1 MAL gene_id:4118|Hs108|chr2             ( 153)  396 99.5 8.5e-22
CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8         ( 176)  293 75.7 1.4e-14
CCDS2007.1 MAL gene_id:4118|Hs108|chr2             ( 111)  248 65.2 1.3e-11


>>CCDS2085.1 MALL gene_id:7851|Hs108|chr2                 (153 aa)
 initn: 1003 init1: 1003 opt: 1003  Z-score: 1263.7  bits: 239.9 E(32554): 4.5e-64
Smith-Waterman score: 1003; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE1 MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKL
               70        80        90       100       110       120

              130       140       150   
pF1KE1 LDPRIYYINSAASFFAFIATLLYILHAFSIYYH
       :::::::::::::::::::::::::::::::::
CCDS20 LDPRIYYINSAASFFAFIATLLYILHAFSIYYH
              130       140       150   

>>CCDS2006.1 MAL gene_id:4118|Hs108|chr2                  (153 aa)
 initn: 393 init1: 393 opt: 396  Z-score: 504.8  bits: 99.5 E(32554): 8.5e-22
Smith-Waterman score: 396; 42.8% identity (73.8% similar) in 145 aa overlap (7-150:3-147)

               10        20        30        40        50        60
pF1KE1 MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVM
             ::.. . : .::: ..: :.:  .:. :.::: ::: .::.. . .::.:::::
CCDS20     MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVM
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE1 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKL
       .::.  :. .  ... :..: .    :: .::. :: :....:.::.::.. :::. .  
CCDS20 FVSVFCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDG
         60        70        80        90       100       110      

              130       140        150      
pF1KE1 LDPRIYYINSAASFFAFIATLLYILHA-FSIYYH   
       .  : :. : ::  :..::::::..:: ::.      
CCDS20 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
        120       130       140       150   

>>CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8              (176 aa)
 initn: 262 init1: 197 opt: 293  Z-score: 375.2  bits: 75.7 E(32554): 1.4e-14
Smith-Waterman score: 337; 40.5% identity (66.0% similar) in 153 aa overlap (4-143:11-163)

                      10          20        30        40        50 
pF1KE1        MASPDPPATSYAPSDV--PSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIV
                 :  ::.:. :  :  :.:  .. :   ::   :..:: ::: .::.... 
CCDS75 MSAGGASVPPPPNPAVSFPPPRVTLPAGPDILRTYSGAFVCLEILFGGLVWILVASSNVP
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KE1 YPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFES-WRVLDSLYHGTTGILYMSAAVLQ
        ::::::::.::.:.:..::.::  .: :.  .... :  ::  :: :. ..:..: .:.
CCDS75 LPLLQGWVMFVSVTAFFFSLLFLGMFLSGMVAQIDANWNFLDFAYHFTVFVFYFGAFLLE
               70        80        90       100       110       120

                        120       130       140       150      
pF1KE1 VHAT----------IVSEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYYH   
       . ::          :... ::.   : :: :::.:::..:  :             
CCDS75 AAATSLHDLHCNTTITGQPLLSDNQYNINVAASIFAFMTTACYGCSLGLALRRWRP
              130       140       150       160       170      

>>CCDS2007.1 MAL gene_id:4118|Hs108|chr2                  (111 aa)
 initn: 291 init1: 239 opt: 248  Z-score: 321.7  bits: 65.2 E(32554): 1.3e-11
Smith-Waterman score: 248; 38.1% identity (69.5% similar) in 105 aa overlap (7-111:3-105)

               10        20        30        40        50        60
pF1KE1 MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVM
             ::.. . : .::: ..: :.:  .:. :.::: ::: .::.. . .::.:::::
CCDS20     MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVM
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE1 YVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKL
       .::.  :. .  ... :..: .    :: .:   : .:  .::.  ::...         
CCDS20 FVSVFCFVATTTLIILYIIGAHGGETSWVTLVFSYIAT--LLYVVHAVFSLIRWKSS   
         60        70        80        90         100       110    

              130       140       150   
pF1KE1 LDPRIYYINSAASFFAFIATLLYILHAFSIYYH




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:32:13 2016 done: Mon Nov  7 02:32:13 2016
 Total Scan time:  1.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]