Result of FASTA (ccds) for
pFN21AE1550
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1550, 847 aa
1>>>pF1KE1550 847 - 847 aa - 847 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5798+/-0.00104; mu= 7.0540+/- 0.063
mean_var=190.6713+/-37.232, 0's: 0 Z-trim(110.5): 13 B-trim: 11 in 1/51
Lambda= 0.092882
statistics sampled from 11646 (11657) to 11646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.358), width: 16
Scan time: 3.900
The best scores are: opt bits E(32554)
CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 ( 847) 5514 751.9 1e-216
CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX ( 327) 552 86.8 6.9e-17
CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX ( 329) 538 84.9 2.5e-16
>>CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 (847 aa)
initn: 5514 init1: 5514 opt: 5514 Z-score: 4004.2 bits: 751.9 E(32554): 1e-216
Smith-Waterman score: 5514; 99.8% identity (99.9% similar) in 847 aa overlap (1-847:1-847)
10 20 30 40 50 60
pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VAAKFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS11 VAAKFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKPKAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKPKAEG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 GRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 EEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 FSLCTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAG
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FSLSTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 VRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIED
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 DADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 TEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKSDDDGFEIVPIEDPAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKSDDDGFEIVPIEDPAKH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 RILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 KKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 QLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQ
790 800 810 820 830 840
pF1KE1 KKKHKRK
:::::::
CCDS11 KKKHKRK
>>CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX (327 aa)
initn: 569 init1: 322 opt: 552 Z-score: 416.7 bits: 86.8 E(32554): 6.9e-17
Smith-Waterman score: 552; 39.3% identity (68.8% similar) in 234 aa overlap (5-232:2-235)
10 20 30 40 50 60
pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ
:...:..:: .:.::::.:.:.::::::.::...::..: . .:::::::.: :
CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQ
10 20 30 40 50
70 80 90 100 110
pF1KE1 VAAKFM--PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDG
: .. . :. .:.::: . :::.:: .: ::: . . ...: .:.:. ::
CCDS14 VLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 APNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRV
::.: . : : ::.: : :: .: : :: :..:.::.:: : .: .: :
CCDS14 APDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 QATKPQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFAFKEVEVQAKTVTELVTKK
.::..::. : : :.::::. :. ... ..: .. :.... .. .. .::
CCDS14 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCC
CCDS14 DLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISR
240 250 260 270 280 290
>>CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX (329 aa)
initn: 551 init1: 304 opt: 538 Z-score: 406.5 bits: 84.9 E(32554): 2.5e-16
Smith-Waterman score: 538; 39.0% identity (68.2% similar) in 236 aa overlap (5-232:2-237)
10 20 30 40 50 60
pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ
:...:..:: .:.::::.:.:.::::::.::...::..: . .:::::::.: :
CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQ
10 20 30 40 50
70 80 90 100 110
pF1KE1 VAAKFM--PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDG
: .. . :. .:.::: . :::.:: .: ::: . . ...: .:.:. ::
CCDS14 VLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 APNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRV
::.: . : : ::.: : :: .: : :: :..:.::.:: : .: .: :
CCDS14 APDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 QATKPQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFA--FKEVEVQAKTVTELVT
.::..::. : : :.::::. :. ... ..: .. :.... .. .. .::
CCDS14 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 KKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRV
CCDS14 CGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPI
240 250 260 270 280 290
847 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:45:56 2016 done: Sun Nov 6 23:45:57 2016
Total Scan time: 3.900 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]