FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1544, 450 aa
  1>>>pF1KE1544 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1027+/-0.00105; mu= 14.1853+/- 0.062
 mean_var=116.5073+/-23.754, 0's: 0 Z-trim(106.6): 129  B-trim: 0 in 0/52
 Lambda= 0.118822
 statistics sampled from 8909 (9054) to 8909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS10554.1 BFAR gene_id:51283|Hs108|chr16         ( 450) 3102 543.2 1.9e-154
CCDS81947.1 BFAR gene_id:51283|Hs108|chr16         ( 325) 1629 290.6 1.6e-78


>>CCDS10554.1 BFAR gene_id:51283|Hs108|chr16              (450 aa)
 initn: 3102 init1: 3102 opt: 3102  Z-score: 2886.2  bits: 543.2 E(32554): 1.9e-154
Smith-Waterman score: 3102; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KE1 MEEPQKSYVNTMDLERDEPLKSTGPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEEPQKSYVNTMDLERDEPLKSTGPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 WWASSKKTECPECREKWEGFPKVSILLRDAIEKLFPDAIRLRFEDIQQNNDIVQSLAAFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WWASSKKTECPECREKWEGFPKVSILLRDAIEKLFPDAIRLRFEDIQQNNDIVQSLAAFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KYGNDQIPLAPNTGRANQQMGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVHKAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KYGNDQIPLAPNTGRANQQMGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVHKAVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KWTAEEVVLWLEQLGPWASLYRERFLSERVNGRLLLTLTEEEFSKTPYTIENSSHRRAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KWTAEEVVLWLEQLGPWASLYRERFLSERVNGRLLLTLTEEEFSKTPYTIENSSHRRAIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 MELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTFLPFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTFLPFIH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TICPLQEDSSGEDIVTKLLDLKEPTWKQWREFLVKYSFLPYQLIAEFAWDWLEVHYWTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TICPLQEDSSGEDIVTKLLDLKEPTWKQWREFLVKYSFLPYQLIAEFAWDWLEVHYWTSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FLIINAMLLSVLELFSFWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FLIINAMLLSVLELFSFWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCN
              370       380       390       400       410       420

              430       440       450
pF1KE1 CLFYWALYFNPIINIDLVVKELRRLETQVL
       ::::::::::::::::::::::::::::::
CCDS10 CLFYWALYFNPIINIDLVVKELRRLETQVL
              430       440       450

>>CCDS81947.1 BFAR gene_id:51283|Hs108|chr16              (325 aa)
 initn: 1629 init1: 1629 opt: 1629  Z-score: 1523.3  bits: 290.6 E(32554): 1.6e-78
Smith-Waterman score: 2011; 72.2% identity (72.2% similar) in 450 aa overlap (1-450:1-325)

               10        20        30        40        50        60
pF1KE1 MEEPQKSYVNTMDLERDEPLKSTGPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEEPQKSYVNTMDLERDEPLKSTGPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 WWASSKKTECPECREKWEGFPKVSILLRDAIEKLFPDAIRLRFEDIQQNNDIVQSLAAFQ
       ::::::::::::::::::::::::::::                                
CCDS81 WWASSKKTECPECREKWEGFPKVSILLR--------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE1 KYGNDQIPLAPNTGRANQQMGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVHKAVA
                                                                   
CCDS81 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE1 KWTAEEVVLWLEQLGPWASLYRERFLSERVNGRLLLTLTEEEFSKTPYTIENSSHRRAIL
                                        :::::::::::::::::::::::::::
CCDS81 ---------------------------------LLLTLTEEEFSKTPYTIENSSHRRAIL
                                        90       100       110     

              250       260       270       280       290       300
pF1KE1 MELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTFLPFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTFLPFIH
         120       130       140       150       160       170     

              310       320       330       340       350       360
pF1KE1 TICPLQEDSSGEDIVTKLLDLKEPTWKQWREFLVKYSFLPYQLIAEFAWDWLEVHYWTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TICPLQEDSSGEDIVTKLLDLKEPTWKQWREFLVKYSFLPYQLIAEFAWDWLEVHYWTSR
         180       190       200       210       220       230     

              370       380       390       400       410       420
pF1KE1 FLIINAMLLSVLELFSFWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLIINAMLLSVLELFSFWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCN
         240       250       260       270       280       290     

              430       440       450
pF1KE1 CLFYWALYFNPIINIDLVVKELRRLETQVL
       ::::::::::::::::::::::::::::::
CCDS81 CLFYWALYFNPIINIDLVVKELRRLETQVL
         300       310       320     




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:20:56 2016 done: Sun Nov  6 23:20:57 2016
 Total Scan time:  2.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]