FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1536, 323 aa
  1>>>pF1KE1536 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3231+/-0.000906; mu= 16.2116+/- 0.055
 mean_var=72.5047+/-14.328, 0's: 0 Z-trim(106.0): 22  B-trim: 0 in 0/50
 Lambda= 0.150623
 statistics sampled from 8697 (8708) to 8697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.267), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS4064.1 CCNH gene_id:902|Hs108|chr5             ( 323) 2129 471.8 3.1e-133


>>CCDS4064.1 CCNH gene_id:902|Hs108|chr5                  (323 aa)
 initn: 2129 init1: 2129 opt: 2129  Z-score: 2505.4  bits: 471.8 E(32554): 3.1e-133
Smith-Waterman score: 2129; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
              250       260       270       280       290       300

              310       320   
pF1KE1 DYVSKKSKHEEEEWTDDDLVESL
       :::::::::::::::::::::::
CCDS40 DYVSKKSKHEEEEWTDDDLVESL
              310       320   




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:21:55 2016 done: Mon Nov  7 02:21:55 2016
 Total Scan time:  2.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]