FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1535, 777 aa
  1>>>pF1KE1535 777 - 777 aa - 777 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.4729+/-0.00107; mu= -14.9249+/- 0.064
 mean_var=456.1553+/-95.484, 0's: 0 Z-trim(115.7): 48  B-trim: 0 in 0/53
 Lambda= 0.060051
 statistics sampled from 16205 (16247) to 16205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.499), width:  16
 Scan time:  4.530

The best scores are:                                      opt bits E(32554)
CCDS11784.1 HGS gene_id:9146|Hs108|chr17           ( 777) 5205 465.5 1.5e-130


>>CCDS11784.1 HGS gene_id:9146|Hs108|chr17                (777 aa)
 initn: 5205 init1: 5205 opt: 5205  Z-score: 2457.5  bits: 465.5 E(32554): 1.5e-130
Smith-Waterman score: 5205; 100.0% identity (100.0% similar) in 777 aa overlap (1-777:1-777)

               10        20        30        40        50        60
pF1KE1 MGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAEGKATSTTELPPEYLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAEGKATSTTELPPEYLTS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PLSQQSQLPPKRDETALQEEEELQLALALSQSEAEEKERLRQKSTYTSYPKAEPMPSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLSQQSQLPPKRDETALQEEEELQLALALSQSEAEEKERLRQKSTYTSYPKAEPMPSASS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 APPASSLYSSPVNSSAPLAEDIDPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 APPASSLYSSPVNSSAPLAEDIDPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 PGEGHAAPTNVVENPLPETDSQPIPPSGGPFSEPQFHNGESEESHEQFLKALQNAVTTFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PGEGHAAPTNVVENPLPETDSQPIPPSGGPFSEPQFHNGESEESHEQFLKALQNAVTTFV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 NRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 RGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 KERQMRLEQQKQTVQMRAQMPAFPLPYAQLQAMPAAGGVLYQPSGPASFPSTFSPAGSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KERQMRLEQQKQTVQMRAQMPAFPLPYAQLQAMPAAGGVLYQPSGPASFPSTFSPAGSVE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 GSPMHGVYMSQPAPAAGPYPSMPSTAADPSMVSAYMYPAGATGAQAAPQAQAGPTASPAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSPMHGVYMSQPAPAAGPYPSMPSTAADPSMVSAYMYPAGATGAQAAPQAQAGPTASPAY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 SSYQPTPTAGYQNVASQAPQSLPAISQPPQSSTMGYMGSQSVSMGYQPYNMQNLMTTLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSYQPTPTAGYQNVASQAPQSLPAISQPPQSSTMGYMGSQSVSMGYQPYNMQNLMTTLPS
              670       680       690       700       710       720

              730       740       750       760       770       
pF1KE1 QDASLPPQQPYIAGQQPMYQQMAPSGGPPQQQPPVAQQPQAQGPPAQGSEAQLISFD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QDASLPPQQPYIAGQQPMYQQMAPSGGPPQQQPPVAQQPQAQGPPAQGSEAQLISFD
              730       740       750       760       770       




777 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:14:29 2016 done: Sun Nov  6 20:14:30 2016
 Total Scan time:  4.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]