FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1534, 94 aa
  1>>>pF1KE1534 94 - 94 aa - 94 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9388+/-0.000646; mu= 10.2268+/- 0.039
 mean_var=51.8445+/-10.068, 0's: 0 Z-trim(109.3): 27  B-trim: 136 in 1/52
 Lambda= 0.178124
 statistics sampled from 10738 (10763) to 10738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS3574.1 CXCL11 gene_id:6373|Hs108|chr4          (  94)  617 165.7 3.8e-42
CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4          ( 125)  217 63.0 4.3e-11


>>CCDS3574.1 CXCL11 gene_id:6373|Hs108|chr4               (94 aa)
 initn: 617 init1: 617 opt: 617  Z-score: 870.2  bits: 165.7 E(32554): 3.8e-42
Smith-Waterman score: 617; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
               10        20        30        40        50        60

               70        80        90    
pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
       ::::::::::::::::::::::::::::::::::
CCDS35 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
               70        80        90    

>>CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4               (125 aa)
 initn: 205 init1: 140 opt: 217  Z-score: 312.7  bits: 63.0 E(32554): 4.3e-11
Smith-Waterman score: 217; 37.6% identity (71.0% similar) in 93 aa overlap (1-92:1-92)

               10         20        30        40        50         
pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK
       :. .:. . :..:: . . ::: :. ..::: ::. .  .... ...  . . :: .:.:
CCDS34 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
               10        20        30        40        50        60

      60        70        80        90                             
pF1KE1 IEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF                         
       ::.: ::: :  : :::: : ... .::: :..                           
CCDS34 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
                70        80        90       100       110         

CCDS34 RQKKTT
     120     




94 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:20:43 2016 done: Mon Nov  7 02:20:43 2016
 Total Scan time:  1.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]