Result of FASTA (ccds) for
pFN21AE1528
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1528, 152 aa
1>>>pF1KE1528 152 - 152 aa - 152 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0957+/-0.000572; mu= 13.2181+/- 0.035
mean_var=63.6743+/-12.592, 0's: 0 Z-trim(112.3): 64 B-trim: 0 in 0/54
Lambda= 0.160728
statistics sampled from 12989 (13054) to 12989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.401), width: 16
Scan time: 1.800
The best scores are: opt bits E(32554)
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 1033 247.2 2.9e-66
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 993 237.9 1.8e-63
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 775 187.3 2.5e-48
CCDS14581.1 UBE2A gene_id:7319|Hs108|chrX ( 122) 464 115.2 1.3e-26
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 443 110.4 4.4e-25
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 440 109.7 7.1e-25
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 434 108.3 1.9e-24
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 432 107.8 2.6e-24
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 431 107.6 3e-24
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 429 107.1 4.2e-24
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 423 105.7 1.1e-23
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 422 105.5 1.4e-23
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 411 103.0 8.8e-23
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 399 100.2 5.5e-22
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 396 99.5 1.1e-21
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 395 99.3 1.2e-21
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 394 99.1 1.5e-21
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 391 98.3 1.8e-21
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 374 94.3 2.4e-20
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 373 94.1 2.8e-20
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 376 94.9 2.9e-20
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 363 91.9 2.1e-19
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 353 89.5 9.7e-19
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 348 88.4 2.2e-18
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 327 83.4 4.3e-17
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 324 82.8 9e-17
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 316 81.0 4.1e-16
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 313 80.2 5.7e-16
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 304 78.2 2.6e-15
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 303 77.9 2.7e-15
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 301 77.4 3.7e-15
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 298 76.9 8.2e-15
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 296 76.3 8.4e-15
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 290 75.0 2.8e-14
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 283 73.4 9.5e-14
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 275 71.5 2.7e-13
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 274 71.2 3.4e-13
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 259) 265 69.2 1.8e-12
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 260 68.0 3.8e-12
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 256 67.0 4.2e-12
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 245 64.4 2.7e-11
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 1033 init1: 1033 opt: 1033 Z-score: 1303.0 bits: 247.2 E(32554): 2.9e-66
Smith-Waterman score: 1033; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
70 80 90 100 110 120
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
::::::::::::::::::::::::::::::::
CCDS41 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
130 140 150
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 1006 init1: 993 opt: 993 Z-score: 1252.9 bits: 237.9 E(32554): 1.8e-63
Smith-Waterman score: 993; 96.0% identity (98.7% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
:::::::::::::::::::::.:::::::::::: ::::::::::::::::::::.:::.
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
70 80 90 100 110 120
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
::::::::::::::::::::::::::::: :
CCDS14 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
130 140 150
>>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa)
initn: 784 init1: 771 opt: 775 Z-score: 981.3 bits: 187.3 E(32554): 2.5e-48
Smith-Waterman score: 775; 95.8% identity (98.3% similar) in 118 aa overlap (34-151:1-118)
10 20 30 40 50 60
pF1KE1 PARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEY
: ::::::::::::::::::::.:::.:::
CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEY
10 20 30
70 80 90 100 110 120
pF1KE1 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPAN
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPAN
40 50 60 70 80 90
130 140 150
pF1KE1 SQAAQLYQENKREYEKRVSAIVEQSWNDS
:::::::::::::::::::::::::: :
CCDS78 SQAAQLYQENKREYEKRVSAIVEQSWRDC
100 110
>>CCDS14581.1 UBE2A gene_id:7319|Hs108|chrX (122 aa)
initn: 784 init1: 462 opt: 464 Z-score: 591.4 bits: 115.2 E(32554): 1.3e-26
Smith-Waterman score: 728; 78.1% identity (78.8% similar) in 151 aa overlap (1-151:1-121)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
:::::::::::::::::::::.:::::::::::: :::::::::::::::
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFED----------
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::::::::::::::::::::::::::::::
CCDS14 --------------------VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
60 70 80 90
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
::::::::::::::::::::::::::::: :
CCDS14 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
100 110 120
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 400 init1: 400 opt: 443 Z-score: 563.9 bits: 110.4 E(32554): 4.4e-25
Smith-Waterman score: 443; 42.2% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
: .:..... ::.:::. :..: .....:.:.:.::. .:.. :.: :.:.:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : : .:..:::. ..::::::::...:::. ::..: :: ::: .:::..
CCDS54 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . :. :. ....:..
CCDS54 PLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 438 init1: 422 opt: 440 Z-score: 560.1 bits: 109.7 E(32554): 7.1e-25
Smith-Waterman score: 440; 41.5% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
: .:...... ::.:::. :..: .....:.:.:.:: . .. :.: :...:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: . : .:..:::. ..::::::::...:::. ::..: :: ::: .:::..
CCDS72 TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . ::.:. .:..:..
CCDS72 PLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 396 init1: 384 opt: 434 Z-score: 552.6 bits: 108.3 E(32554): 1.9e-24
Smith-Waterman score: 434; 40.0% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
: .:. .... : .:::. :..: .....:.:.:.::. .:.. :.: :.:.:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : : ....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS43 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . :..:. ....:..
CCDS43 PLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 396 init1: 384 opt: 432 Z-score: 550.1 bits: 107.8 E(32554): 2.6e-24
Smith-Waterman score: 432; 40.6% identity (78.3% similar) in 138 aa overlap (5-142:2-138)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
: .:. .... : .:::. :..: .....:.:.:.::. .:.. :.: :.:.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : : ....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . :..:. .. .:. :.:
CCDS36 PLVPEIARIYKTDRDKYN-RISREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 396 init1: 384 opt: 431 Z-score: 548.8 bits: 107.6 E(32554): 3e-24
Smith-Waterman score: 431; 40.0% identity (78.5% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
: .:. .... : .:::. :..: .....:.:.:.::. .:.. :.: :.:.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : : ....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . :..:. .. .:..
CCDS36 PLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 396 init1: 384 opt: 429 Z-score: 546.2 bits: 107.1 E(32554): 4.2e-24
Smith-Waterman score: 429; 40.9% identity (78.1% similar) in 137 aa overlap (6-142:5-140)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
:. : .... : .:::. :..: .....:.:.:.::. .:.. :.: :.:.:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : : ....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
: . :..:. .. .:. :.:
CCDS36 PLVPEIARIYKTDRDKYN-RISREWTQKYAM
120 130 140
152 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:18:26 2016 done: Mon Nov 7 02:18:27 2016
Total Scan time: 1.800 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]