FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1526, 362 aa
  1>>>pF1KE1526 362 - 362 aa - 362 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3705+/-0.000779; mu= 9.9292+/- 0.047
 mean_var=189.3767+/-38.153, 0's: 0 Z-trim(115.5): 8  B-trim: 0 in 0/51
 Lambda= 0.093199
 statistics sampled from 16077 (16082) to 16077 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.494), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS33111.1 HSPBP1 gene_id:23640|Hs108|chr19       ( 359) 2401 334.5 8.5e-92


>>CCDS33111.1 HSPBP1 gene_id:23640|Hs108|chr19            (359 aa)
 initn: 2253 init1: 2253 opt: 2401  Z-score: 1761.5  bits: 334.5 E(32554): 8.5e-92
Smith-Waterman score: 2401; 99.2% identity (99.2% similar) in 362 aa overlap (1-362:1-359)

               10        20        30        40        50        60
pF1KE1 MSDEGSRGSRLPLALPPASQGCSSGGGGGGGGGSSAGGSGNSRPPRNLQGLLQMAITAGS
       ::::::::::::::::::::::::::::::   :::::::::::::::::::::::::::
CCDS33 MSDEGSRGSRLPLALPPASQGCSSGGGGGG---SSAGGSGNSRPPRNLQGLLQMAITAGS
               10        20        30           40        50       

               70        80        90       100       110       120
pF1KE1 EEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKSCLRVLSQPMPPTAGEAEQAADQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKSCLRVLSQPMPPTAGEAEQAADQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSM
       300       310       320       330       340       350       

         
pF1KE1 DR
       ::
CCDS33 DR
         




362 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:53:22 2016 done: Mon Nov  7 02:53:22 2016
 Total Scan time:  3.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]