Result of FASTA (omim) for
pFN21AE1525
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1525, 257 aa
1>>>pF1KE1525 257 - 257 aa - 257 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2881+/-0.000384; mu= 15.5246+/- 0.024
mean_var=105.3569+/-22.430, 0's: 0 Z-trim(114.0): 155 B-trim: 33 in 1/56
Lambda= 0.124952
statistics sampled from 23373 (23546) to 23373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.276), width: 16
Scan time: 6.570
The best scores are: opt bits E(85289)
NP_001992 (OMIM: 147140) high affinity immunoglobu ( 257) 1765 328.8 6e-90
NP_001121068 (OMIM: 146740,615707) low affinity im ( 253) 546 109.0 8.4e-24
XP_016856150 (OMIM: 601502) PREDICTED: high affini ( 281) 545 108.9 1e-23
NP_001121064 (OMIM: 146740,615707) low affinity im ( 358) 546 109.2 1.1e-23
NP_001121065 (OMIM: 146740,615707) low affinity im ( 254) 542 108.3 1.4e-23
NP_001121067 (OMIM: 146740,615707) low affinity im ( 254) 542 108.3 1.4e-23
NP_001316049 (OMIM: 146740,615707) low affinity im ( 254) 542 108.3 1.4e-23
NP_000560 (OMIM: 146740,615707) low affinity immun ( 359) 542 108.5 1.7e-23
NP_001017986 (OMIM: 601502) high affinity immunogl ( 280) 537 107.5 2.8e-23
NP_001257964 (OMIM: 610665) low affinity immunoglo ( 268) 526 105.5 1.1e-22
NP_000561 (OMIM: 610665) low affinity immunoglobul ( 233) 522 104.7 1.6e-22
NP_001231682 (OMIM: 610665) low affinity immunoglo ( 269) 522 104.7 1.7e-22
NP_001257965 (OMIM: 610665) low affinity immunoglo ( 216) 509 102.3 7.7e-22
XP_005245014 (OMIM: 146760) PREDICTED: high affini ( 375) 510 102.7 9.7e-22
NP_001231839 (OMIM: 601502) high affinity immunogl ( 224) 500 100.7 2.4e-21
NP_000557 (OMIM: 146760) high affinity immunoglobu ( 374) 501 101.1 3e-21
NP_003992 (OMIM: 152700,604590,611162) low affinit ( 310) 490 99.0 1e-20
XP_016856160 (OMIM: 152700,604590,611162) PREDICTE ( 310) 490 99.0 1e-20
XP_011507594 (OMIM: 152700,604590,611162) PREDICTE ( 234) 484 97.8 1.8e-20
NP_001002275 (OMIM: 152700,604590,611162) low affi ( 309) 485 98.1 1.9e-20
NP_001002274 (OMIM: 152700,604590,611162) low affi ( 291) 482 97.6 2.7e-20
XP_016856161 (OMIM: 152700,604590,611162) PREDICTE ( 291) 482 97.6 2.7e-20
XP_016856158 (OMIM: 152700,604590,611162) PREDICTE ( 324) 482 97.6 2.9e-20
NP_963857 (OMIM: 188030,612169) low affinity immun ( 323) 479 97.1 4.2e-20
NP_001002273 (OMIM: 152700,604590,611162) low affi ( 290) 477 96.7 5.1e-20
XP_016856159 (OMIM: 152700,604590,611162) PREDICTE ( 323) 477 96.7 5.5e-20
XP_011507593 (OMIM: 146790,152700,611162) PREDICTE ( 261) 468 95.0 1.5e-19
XP_011507592 (OMIM: 146790,152700,611162) PREDICTE ( 317) 468 95.1 1.7e-19
NP_001129691 (OMIM: 146790,152700,611162) low affi ( 317) 468 95.1 1.7e-19
XP_016856154 (OMIM: 146790,152700,611162) PREDICTE ( 353) 468 95.1 1.8e-19
XP_016856153 (OMIM: 146790,152700,611162) PREDICTE ( 353) 468 95.1 1.8e-19
NP_001177757 (OMIM: 152700,604590,611162) low affi ( 303) 467 94.9 1.8e-19
XP_011507589 (OMIM: 146790,152700,611162) PREDICTE ( 369) 468 95.2 1.8e-19
XP_016856156 (OMIM: 146790,152700,611162) PREDICTE ( 276) 465 94.5 2.2e-19
XP_016856155 (OMIM: 146790,152700,611162) PREDICTE ( 328) 465 94.6 2.5e-19
NP_067674 (OMIM: 146790,152700,611162) low affinit ( 316) 459 93.5 5.1e-19
XP_016856152 (OMIM: 146790,152700,611162) PREDICTE ( 368) 459 93.5 5.6e-19
XP_016856157 (OMIM: 146790,152700,611162) PREDICTE ( 275) 456 92.8 6.8e-19
NP_001275760 (OMIM: 609251) Fc receptor-like B iso ( 275) 450 91.8 1.4e-18
NP_001275758 (OMIM: 609251) Fc receptor-like B iso ( 318) 450 91.8 1.6e-18
NP_001307170 (OMIM: 609251) Fc receptor-like B iso ( 426) 450 92.0 1.9e-18
NP_001002901 (OMIM: 609251) Fc receptor-like B iso ( 426) 450 92.0 1.9e-18
NP_001275761 (OMIM: 609251) Fc receptor-like B iso ( 268) 438 89.6 6.3e-18
NP_001275759 (OMIM: 609251) Fc receptor-like B iso ( 311) 438 89.7 7e-18
NP_112572 (OMIM: 605876) Fc receptor-like protein ( 515) 362 76.2 1.3e-13
XP_011508336 (OMIM: 605876) PREDICTED: Fc receptor ( 514) 359 75.7 1.9e-13
XP_011508335 (OMIM: 605877) PREDICTED: Fc receptor ( 844) 353 74.8 5.5e-13
XP_011508333 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 353 74.9 5.7e-13
XP_011508334 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 353 74.9 5.7e-13
NP_112571 (OMIM: 605877) Fc receptor-like protein ( 977) 353 74.9 6.1e-13
>>NP_001992 (OMIM: 147140) high affinity immunoglobulin (257 aa)
initn: 1765 init1: 1765 opt: 1765 Z-score: 1735.9 bits: 328.8 E(85289): 6e-90
Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 STKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 WQLDYESEPLNITVIKAPREKYWLQFFIPLLVVILFAVDTGLFISTQQQVTFLLKIKRTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQLDYESEPLNITVIKAPREKYWLQFFIPLLVVILFAVDTGLFISTQQQVTFLLKIKRTR
190 200 210 220 230 240
250
pF1KE1 KGFRLLNPHPKPNPKNN
:::::::::::::::::
NP_001 KGFRLLNPHPKPNPKNN
250
>>NP_001121068 (OMIM: 146740,615707) low affinity immuno (253 aa)
initn: 543 init1: 494 opt: 546 Z-score: 548.3 bits: 109.0 E(85289): 8.4e-24
Smith-Waterman score: 546; 40.8% identity (65.8% similar) in 228 aa overlap (10-230:5-232)
10 20 30 40 50 60
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS
:: .:::... :. . : : :.: : :... ..::: :.: : .
NP_001 MWQLLLPTALLLLVSAGMRTDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDN
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 STKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAE
::.:::: :: :: : : .:::::.:: . . :.:: ::: ::::::
NP_001 STQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRW
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKV
: : .:. ::::.:.: ..:: : ..:.. ::...: .. : .::..:::.:.: :
NP_001 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLF
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 WQLDYESEPLNITVIKAPREKYWLQFFIP-------LLVVILFAVDTGLFISTQQQVTFL
. . :: .:::. .. . .:: : :..:.::::::::..:.. ..
NP_001 GSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSS
180 190 200 210 220 230
240 250
pF1KE1 LKIKRTRKGFRLLNPHPKPNPKNN
NP_001 TRDWKDHKFKWRKDPQDK
240 250
>>XP_016856150 (OMIM: 601502) PREDICTED: high affinity i (281 aa)
initn: 532 init1: 507 opt: 545 Z-score: 546.8 bits: 108.9 E(85289): 1e-23
Smith-Waterman score: 545; 36.5% identity (72.1% similar) in 219 aa overlap (15-230:7-224)
10 20 30 40 50
pF1KE1 MAPAMESPTLLCVALLFFAP-DGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEV
::...: :: .. : ..:.::: .:. :..:: :. ..
XP_016 MWFLTTLLLWVPVDGQVVDTTKAVITLQPPWVSVFQEETITLHCEVLHLPGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 SSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASA
:::.:: ::. .. .. : :..:. .:::::.::. ..:.:. ::. :::::.:.
XP_016 SSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK
.: :::.:: ::::.:.. ::.:.::..:.:.:... : :..: .... .:::.:.:
XP_016 RVFMEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSG-
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 VWQLDYESEPLNITVIKAPR--EKYWLQFFIPLLVVILFAVDTGLFISTQQQVTFLLKIK
. . : : .. ..:. . :.. .. : : :.: :.: :... ....
XP_016 MGKHRYTSAGISQYTVKGLQLPTPVWFHVLFYLAVGIMFLVNTVLWVTIRKELKRKKKWN
180 190 200 210 220 230
240 250
pF1KE1 RTRKGFRLLNPHPKPNPKNN
XP_016 LEISLDSGHEKKVISSLQEDRHLEEELKCQEQKEEQLQEGVHRKEPQGAT
240 250 260 270 280
>>NP_001121064 (OMIM: 146740,615707) low affinity immuno (358 aa)
initn: 543 init1: 494 opt: 546 Z-score: 546.6 bits: 109.2 E(85289): 1.1e-23
Smith-Waterman score: 546; 40.8% identity (65.8% similar) in 228 aa overlap (10-230:110-337)
10 20 30
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWN
:: .:::... :. . : : :.: :
NP_001 TSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTDLPKAVVFLEPQWY
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE1 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVN
:... ..::: :.: : .::.:::: :: :: : : .:::::.:: . .
NP_001 RVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLST
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE1 ESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH
:.:: ::: :::::: : : .:. ::::.:.: ..:: : ..:.. ::...:
NP_001 LSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNS
200 210 220 230 240 250
160 170 180 190 200 210
pF1KE1 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREKYWLQFFIP-------LLV
.. : .::..:::.:.: : . . :: .:::. .. . .:: : :..
NP_001 DFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVM
260 270 280 290 300 310
220 230 240 250
pF1KE1 VILFAVDTGLFISTQQQVTFLLKIKRTRKGFRLLNPHPKPNPKNN
:.::::::::..:.. ..
NP_001 VLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
320 330 340 350
>>NP_001121065 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 526 init1: 477 opt: 542 Z-score: 544.4 bits: 108.3 E(85289): 1.4e-23
Smith-Waterman score: 542; 40.9% identity (66.1% similar) in 230 aa overlap (10-230:5-233)
10 20 30 40 50
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPK--VSLNPPWNRIFKGENVTLTCNGNNFFE
:: .:::... : . . . :: : :.: : :... ..::: :.: :
NP_001 MWQLLLPTALLLLVSAG-MRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 VSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS
.::.:::: :: :: : : .:::::.:: . . :.:: ::: ::::::
NP_001 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTG
: : .:. ::::.:.: ..:: : ..:.. ::...: .. : .::..:::.:.: :
NP_001 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 KVWQLDYESEPLNITVIKAPREKYWLQFFIP-------LLVVILFAVDTGLFISTQQQVT
. . :: .:::. .. . .:: : :..:.::::::::..:.. ..
NP_001 LFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
180 190 200 210 220 230
240 250
pF1KE1 FLLKIKRTRKGFRLLNPHPKPNPKNN
NP_001 SSTRDWKDHKFKWRKDPQDK
240 250
>>NP_001121067 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 526 init1: 477 opt: 542 Z-score: 544.4 bits: 108.3 E(85289): 1.4e-23
Smith-Waterman score: 542; 40.9% identity (66.1% similar) in 230 aa overlap (10-230:5-233)
10 20 30 40 50
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPK--VSLNPPWNRIFKGENVTLTCNGNNFFE
:: .:::... : . . . :: : :.: : :... ..::: :.: :
NP_001 MWQLLLPTALLLLVSAG-MRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 VSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS
.::.:::: :: :: : : .:::::.:: . . :.:: ::: ::::::
NP_001 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTG
: : .:. ::::.:.: ..:: : ..:.. ::...: .. : .::..:::.:.: :
NP_001 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 KVWQLDYESEPLNITVIKAPREKYWLQFFIP-------LLVVILFAVDTGLFISTQQQVT
. . :: .:::. .. . .:: : :..:.::::::::..:.. ..
NP_001 LFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
180 190 200 210 220 230
240 250
pF1KE1 FLLKIKRTRKGFRLLNPHPKPNPKNN
NP_001 SSTRDWKDHKFKWRKDPQDK
240 250
>>NP_001316049 (OMIM: 146740,615707) low affinity immuno (254 aa)
initn: 526 init1: 477 opt: 542 Z-score: 544.4 bits: 108.3 E(85289): 1.4e-23
Smith-Waterman score: 542; 40.9% identity (66.1% similar) in 230 aa overlap (10-230:5-233)
10 20 30 40 50
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPK--VSLNPPWNRIFKGENVTLTCNGNNFFE
:: .:::... : . . . :: : :.: : :... ..::: :.: :
NP_001 MWQLLLPTALLLLVSAG-MRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 VSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQAS
.::.:::: :: :: : : .:::::.:: . . :.:: ::: ::::::
NP_001 DNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTG
: : .:. ::::.:.: ..:: : ..:.. ::...: .. : .::..:::.:.: :
NP_001 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 KVWQLDYESEPLNITVIKAPREKYWLQFFIP-------LLVVILFAVDTGLFISTQQQVT
. . :: .:::. .. . .:: : :..:.::::::::..:.. ..
NP_001 LFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIR
180 190 200 210 220 230
240 250
pF1KE1 FLLKIKRTRKGFRLLNPHPKPNPKNN
NP_001 SSTRDWKDHKFKWRKDPQDK
240 250
>>NP_000560 (OMIM: 146740,615707) low affinity immunoglo (359 aa)
initn: 526 init1: 477 opt: 542 Z-score: 542.6 bits: 108.5 E(85289): 1.7e-23
Smith-Waterman score: 542; 40.9% identity (66.1% similar) in 230 aa overlap (10-230:110-338)
10 20 30
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPK--VSLNPP
:: .:::... : . . . :: : :.:
NP_000 TSSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAG-MRTEDLPKAVVFLEPQ
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE1 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ
: :... ..::: :.: : .::.:::: :: :: : : .:::::.:: .
NP_000 WYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNL
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE1 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE
. :.:: ::: :::::: : : .:. ::::.:.: ..:: : ..:.. ::...
NP_000 STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH
200 210 220 230 240 250
160 170 180 190 200 210
pF1KE1 NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREKYWLQFFIP-------L
: .. : .::..:::.:.: : . . :: .:::. .. . .:: : :
NP_000 NSDFYIPKATLKDSGSYFCRGLFGSKNVSSETVNITITQGLAVSTISSFFPPGYQVSFCL
260 270 280 290 300 310
220 230 240 250
pF1KE1 LVVILFAVDTGLFISTQQQVTFLLKIKRTRKGFRLLNPHPKPNPKNN
..:.::::::::..:.. ..
NP_000 VMVLLFAVDTGLYFSVKTNIRSSTRDWKDHKFKWRKDPQDK
320 330 340 350
>>NP_001017986 (OMIM: 601502) high affinity immunoglobul (280 aa)
initn: 521 init1: 496 opt: 537 Z-score: 539.1 bits: 107.5 E(85289): 2.8e-23
Smith-Waterman score: 537; 37.0% identity (72.1% similar) in 219 aa overlap (15-230:7-223)
10 20 30 40 50
pF1KE1 MAPAMESPTLLCVALLFFAP-DGVLAVPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEV
::...: :: . . : ..:.::: .:. :.::: :. ..
NP_001 MWFLTTLLLWVPVDGQVDTT-KAVITLQPPWVSVFQEETVTLHCEVLHLPGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 SSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASA
:::.:: ::. .. .. : :..:. .:::::.::. ..:.:. ::. :::::.:.
NP_001 SSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK
.: :::.:: ::::.:.. ::.:.::..:.:.:... : :..: .... .:::.:.:
NP_001 RVFMEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSG-
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 VWQLDYESEPLNITVIKAPR--EKYWLQFFIPLLVVILFAVDTGLFISTQQQVTFLLKIK
. . : : .. ..:. . :.. .. : : :.: :.: :... ....
NP_001 MGKHRYTSAGISQYTVKGLQLPTPVWFHVLFYLAVGIMFLVNTVLWVTIRKELKRKKKWN
180 190 200 210 220 230
240 250
pF1KE1 RTRKGFRLLNPHPKPNPKNN
NP_001 LEISLDSGHEKKVISSLQEDRHLEEELKCQEQKEEQLQEGVHRKEPQGAT
240 250 260 270 280
>>NP_001257964 (OMIM: 610665) low affinity immunoglobuli (268 aa)
initn: 527 init1: 478 opt: 526 Z-score: 528.6 bits: 105.5 E(85289): 1.1e-22
Smith-Waterman score: 526; 39.9% identity (64.9% similar) in 228 aa overlap (10-230:41-268)
10 20 30
pF1KE1 MAPAMESPTLLCVALLFFAPDGVLAVPQKPKVSLNPPWN
:: .:::... :. . : : :.: :
NP_001 TPSCLVGLVPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTDLPKAVVFLEPQWY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVN
... ..::: :.: : .::.:::: .: :: : : .:::::.:: . .
NP_001 SVLEKDSVTLKCQGAYSPEDNSTQWFHNENLISSQASSYFIDAATVNDSGEYRCQTNLST
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 ESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH
:.:: ::: :::::: : : .:. ::::.:.: ..:: : ..:. ::...:
NP_001 LSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREKYWLQFFIP-------LLV
.. : .::..:::.:.: : : . . :: .:::. .. . .: : :..
NP_001 DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGLAVSTISSFSPPGYQVSFCLVM
200 210 220 230 240 250
220 230 240 250
pF1KE1 VILFAVDTGLFISTQQQVTFLLKIKRTRKGFRLLNPHPKPNPKNN
:.::::::::..:.. ..
NP_001 VLLFAVDTGLYFSVKTNI
260
257 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:20:09 2016 done: Mon Nov 7 02:20:11 2016
Total Scan time: 6.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]