FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1523, 370 aa
  1>>>pF1KE1523 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4918+/-0.000878; mu= 15.6463+/- 0.053
 mean_var=64.0446+/-12.937, 0's: 0 Z-trim(105.2): 19  B-trim: 0 in 0/51
 Lambda= 0.160263
 statistics sampled from 8312 (8319) to 8312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.256), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS5533.1 TPST1 gene_id:8460|Hs108|chr7           ( 370) 2484 583.1 1.3e-166
CCDS13839.1 TPST2 gene_id:8459|Hs108|chr22         ( 377) 1625 384.5 8.4e-107


>>CCDS5533.1 TPST1 gene_id:8460|Hs108|chr7                (370 aa)
 initn: 2484 init1: 2484 opt: 2484  Z-score: 3104.4  bits: 583.1 E(32554): 1.3e-166
Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KE1 MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPVKLESTRTTVRTGLDLKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPVKLESTRTTVRTGLDLKAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KTFAYHKDMPLIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWSRSSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KTFAYHKDMPLIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWSRSSKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KIRLDEAGVTDEVLDSAMQAFLLEIIVKHGEPAPYLCNKDPFALKSLTYLSRLFPNAKFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KIRLDEAGVTDEVLDSAMQAFLLEIIVKHGEPAPYLCNKDPFALKSLTYLSRLFPNAKFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LMVRDGRASVHSMISRKVTIAGFDLNSYRDCLTKWNRAIETMYNQCMEVGYKKCMLVHYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LMVRDGRASVHSMISRKVTIAGFDLNSYRDCLTKWNRAIETMYNQCMEVGYKKCMLVHYE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGKAGGVSLSKVERSTDQVIKPVNVGALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGKAGGVSLSKVERSTDQVIKPVNVGALS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRRVYKGEFQLPDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRRVYKGEFQLPDFL
              310       320       330       340       350       360

              370
pF1KE1 KEKPQTEQVE
       ::::::::::
CCDS55 KEKPQTEQVE
              370

>>CCDS13839.1 TPST2 gene_id:8459|Hs108|chr22              (377 aa)
 initn: 1635 init1: 1597 opt: 1625  Z-score: 2030.9  bits: 384.5 E(32554): 8.4e-107
Smith-Waterman score: 1625; 65.9% identity (84.6% similar) in 369 aa overlap (5-368:5-367)

               10        20        30        40        50          
pF1KE1 MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPVKLESTRTTVRTGLD----
           ... :: :  ..  : .  :::...::      :.  . :.: : ..:   .    
CCDS13 MRLSVRRVLLAAGCALVLVLAVQLGQQVLEC------RAVLAGLRSPRGAMRPEQEELVM
               10        20        30              40        50    

         60         70        80        90       100       110     
pF1KE1 LKANKT-FAYHKDMPLIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWS
       . .:.. . : : :::::.:::::::::::::::::::..:::::::.:::.::..: ::
CCDS13 VGTNHVEYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWS
           60        70        80        90       100       110    

         120       130       140       150       160       170     
pF1KE1 RSSKEKIRLDEAGVTDEVLDSAMQAFLLEIIVKHGEPAPYLCNKDPFALKSLTYLSRLFP
       .:..::.:::::::::::::.:::::.::.:.::::::  :::::::.::: .:::::::
CCDS13 KSGREKLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFP
          120       130       140       150       160       170    

         180       190       200       210       220       230     
pF1KE1 NAKFLLMVRDGRASVHSMISRKVTIAGFDLNSYRDCLTKWNRAIETMYNQCMEVGYKKCM
       :.:::::::::::::::::.::::::::::.::::::::::.:::.:: :::::: .::.
CCDS13 NSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCL
          180       190       200       210       220       230    

         240       250       260       270       280       290     
pF1KE1 LVHYEQLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGKAGGVSLSKVERSTDQVIKPVN
        :.::::::::.: .. .: :: : :. .:::::..::: :::::::.::::::::::::
CCDS13 PVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLSKIERSTDQVIKPVN
          240       250       260       270       280       290    

         300       310       320       330       340       350     
pF1KE1 VGALSKWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRRVYKGEFQ
       . :::::.:.:: ::..::: ::::::.:::::::::::::.::: .:.::.:: ::...
CCDS13 LEALSKWTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLKGDYK
          300       310       320       330       340       350    

         360       370        
pF1KE1 LPDFLKEKPQTEQVE        
        :  ::   :..:          
CCDS13 TPANLKGYFQVNQNSTSSHLGSS
          360       370       




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:34:44 2016 done: Mon Nov  7 01:34:44 2016
 Total Scan time:  2.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]