Result of FASTA (omim) for
pFN21AE1517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1517, 113 aa
1>>>pF1KE1517 113 - 113 aa - 113 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0629+/-0.000372; mu= 10.4192+/- 0.023
mean_var=50.0136+/- 9.800, 0's: 0 Z-trim(112.1): 15 B-trim: 90 in 1/50
Lambda= 0.181355
statistics sampled from 20879 (20891) to 20879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.245), width: 16
Scan time: 4.260
The best scores are: opt bits E(85289)
NP_006510 (OMIM: 601554) dynein light chain Tctex- ( 113) 746 202.7 1e-52
NP_001278531 (OMIM: 601554) dynein light chain Tct ( 99) 614 168.1 2.3e-42
NP_006511 (OMIM: 300302) dynein light chain Tctex- ( 116) 479 132.8 1.1e-31
NP_001278532 (OMIM: 601554) dynein light chain Tct ( 82) 402 112.7 9.7e-26
NP_001013654 (OMIM: 611713) tctex1 domain-containi ( 221) 146 45.8 3.5e-05
XP_011539678 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 146 45.8 3.5e-05
XP_011539677 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 146 45.8 3.5e-05
XP_016856676 (OMIM: 611713) PREDICTED: tctex1 doma ( 262) 146 45.8 4.1e-05
XP_006710677 (OMIM: 611713) PREDICTED: tctex1 doma ( 279) 146 45.8 4.3e-05
>>NP_006510 (OMIM: 601554) dynein light chain Tctex-type (113 aa)
initn: 746 init1: 746 opt: 746 Z-score: 1067.3 bits: 202.7 E(85289): 1e-52
Smith-Waterman score: 746; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
70 80 90 100 110
>>NP_001278531 (OMIM: 601554) dynein light chain Tctex-t (99 aa)
initn: 614 init1: 614 opt: 614 Z-score: 881.5 bits: 168.1 E(85289): 2.3e-42
Smith-Waterman score: 627; 87.6% identity (87.6% similar) in 113 aa overlap (1-113:1-99)
10 20 30 40 50 60
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
::::::::: :::::::::::::::::::::::::::::::::::::
NP_001 MEDYQAAEE--------------AIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
10 20 30 40
70 80 90 100 110
pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
50 60 70 80 90
>>NP_006511 (OMIM: 300302) dynein light chain Tctex-type (116 aa)
initn: 473 init1: 450 opt: 479 Z-score: 689.5 bits: 132.8 E(85289): 1.1e-31
Smith-Waterman score: 479; 54.4% identity (91.2% similar) in 114 aa overlap (1-113:1-114)
10 20 30 40 50
pF1KE1 MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK
::.:. .:..: ..:. ::::: .....::. :.:...::::...:::.:..:.::::
NP_006 MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
.::::::...::.. :.:::::::::...::.:::::::.:: :::..:...:
NP_006 AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL
70 80 90 100 110
>>NP_001278532 (OMIM: 601554) dynein light chain Tctex-t (82 aa)
initn: 402 init1: 402 opt: 402 Z-score: 583.1 bits: 112.7 E(85289): 9.7e-26
Smith-Waterman score: 402; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
::::
NP_001 FKYIEEWSWITHSKFLLLGQLY
70 80
>>NP_001013654 (OMIM: 611713) tctex1 domain-containing p (221 aa)
initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05
Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218)
10 20 30 40 50
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT
.. :. ... :. ... . . .. ::.
NP_001 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV
100 110 120 130 140 150
60 70 80 90 100
pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF
.: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... ....
NP_001 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH
160 170 180 190 200 210
110
pF1KE1 GLSI
::
NP_001 GLYCE
220
>>XP_011539678 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa)
initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05
Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218)
10 20 30 40 50
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT
.. :. ... :. ... . . .. ::.
XP_011 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV
100 110 120 130 140 150
60 70 80 90 100
pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF
.: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... ....
XP_011 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH
160 170 180 190 200 210
110
pF1KE1 GLSI
::
XP_011 GLYCE
220
>>XP_011539677 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa)
initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05
Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218)
10 20 30 40 50
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT
.. :. ... :. ... . . .. ::.
XP_011 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV
100 110 120 130 140 150
60 70 80 90 100
pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF
.: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... ....
XP_011 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH
160 170 180 190 200 210
110
pF1KE1 GLSI
::
XP_011 GLYCE
220
>>XP_016856676 (OMIM: 611713) PREDICTED: tctex1 domain-c (262 aa)
initn: 120 init1: 120 opt: 146 Z-score: 212.8 bits: 45.8 E(85289): 4.1e-05
Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:168-259)
10 20 30 40 50
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT
.. :. ... :. ... . . .. ::.
XP_016 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV
140 150 160 170 180 190
60 70 80 90 100
pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF
.: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... ....
XP_016 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH
200 210 220 230 240 250
110
pF1KE1 GLSI
::
XP_016 GLYCE
260
>>XP_006710677 (OMIM: 611713) PREDICTED: tctex1 domain-c (279 aa)
initn: 120 init1: 120 opt: 146 Z-score: 212.4 bits: 45.8 E(85289): 4.3e-05
Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:185-276)
10 20 30 40 50
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT
.. :. ... :. ... . . .. ::.
XP_006 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV
160 170 180 190 200 210
60 70 80 90 100
pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF
.: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... ....
XP_006 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH
220 230 240 250 260 270
110
pF1KE1 GLSI
::
XP_006 GLYCE
113 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:31:47 2016 done: Sun Nov 6 22:31:48 2016
Total Scan time: 4.260 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]