FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1517, 113 aa
  1>>>pF1KE1517 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1056+/-0.000792; mu= 10.3418+/- 0.047
 mean_var=50.9699+/-10.101, 0's: 0 Z-trim(105.2): 12  B-trim: 0 in 0/50
 Lambda= 0.179646
 statistics sampled from 8313 (8319) to 8313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.256), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS5257.1 DYNLT1 gene_id:6993|Hs108|chr6          ( 113)  746 200.8 1.4e-52
CCDS14243.1 DYNLT3 gene_id:6990|Hs108|chrX         ( 116)  479 131.7   1e-31


>>CCDS5257.1 DYNLT1 gene_id:6993|Hs108|chr6               (113 aa)
 initn: 746 init1: 746 opt: 746  Z-score: 1057.3  bits: 200.8 E(32554): 1.4e-52
Smith-Waterman score: 746; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
               70        80        90       100       110   

>>CCDS14243.1 DYNLT3 gene_id:6990|Hs108|chrX              (116 aa)
 initn: 473 init1: 450 opt: 479  Z-score: 683.1  bits: 131.7 E(32554): 1e-31
Smith-Waterman score: 479; 54.4% identity (91.2% similar) in 114 aa overlap (1-113:1-114)

                10        20        30        40        50         
pF1KE1 MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK
       ::.:.   .:..: ..:. ::::: .....::. :.:...::::...:::.:..:.::::
CCDS14 MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK
               10        20        30        40        50        60

      60        70        80        90       100       110     
pF1KE1 PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI  
        .::::::...::.. :.:::::::::...::.:::::::.:: :::..:...:  
CCDS14 AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL
               70        80        90       100       110      




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:31:47 2016 done: Sun Nov  6 22:31:47 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]