Result of FASTA (ccds) for
pFN21AE1516
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1516, 1443 aa
1>>>pF1KE1516 1443 - 1443 aa - 1443 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2271+/-0.00104; mu= 18.3393+/- 0.063
mean_var=74.3965+/-15.101, 0's: 0 Z-trim(103.8): 24 B-trim: 0 in 0/50
Lambda= 0.148696
statistics sampled from 7572 (7581) to 7572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.233), width: 16
Scan time: 4.440
The best scores are: opt bits E(32554)
CCDS34966.1 CPSF1 gene_id:29894|Hs108|chr8 (1443) 9599 2069.5 0
>>CCDS34966.1 CPSF1 gene_id:29894|Hs108|chr8 (1443 aa)
initn: 9599 init1: 9599 opt: 9599 Z-score: 11116.4 bits: 2069.5 E(32554): 0
Smith-Waterman score: 9599; 100.0% identity (100.0% similar) in 1443 aa overlap (1-1443:1-1443)
10 20 30 40 50 60
pF1KE1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE1 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE1 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE1 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE1 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE1 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE1 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE1 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE1 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE1 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE1 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE1 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT
1390 1400 1410 1420 1430 1440
pF1KE1 AHF
:::
CCDS34 AHF
1443 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:05:03 2016 done: Mon Nov 7 01:05:04 2016
Total Scan time: 4.440 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]