FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1513, 181 aa
  1>>>pF1KE1513 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2034+/-0.000305; mu= 13.0864+/- 0.019
 mean_var=63.0989+/-12.465, 0's: 0 Z-trim(115.0): 33  B-trim: 36 in 1/57
 Lambda= 0.161459
 statistics sampled from 25231 (25257) to 25231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.296), width:  16
 Scan time:  5.510

The best scores are:                                      opt bits E(85289)
NP_008984 (OMIM: 604463) CD160 antigen precursor [ ( 181) 1203 288.5 4.1e-78
XP_005272986 (OMIM: 604463) PREDICTED: CD160 antig ( 234) 1196 286.9 1.6e-77
XP_011507406 (OMIM: 604463) PREDICTED: CD160 antig ( 234) 1196 286.9 1.6e-77


>>NP_008984 (OMIM: 604463) CD160 antigen precursor [Homo  (181 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1523.4  bits: 288.5 E(85289): 4.1e-78
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
              130       140       150       160       170       180

        
pF1KE1 L
       :
NP_008 L
        

>>XP_005272986 (OMIM: 604463) PREDICTED: CD160 antigen i  (234 aa)
 initn: 1213 init1: 1196 opt: 1196  Z-score: 1512.9  bits: 286.9 E(85289): 1.6e-77
Smith-Waterman score: 1196; 98.9% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_005 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQG
              130       140       150       160       170       180

                                                             
pF1KE1 L                                                     
       .                                                     
XP_005 MSKRAVSTPSNEGAIIFLPPWLFSRRRRLERMSRGREKCYSSPGYPQESSNQFH
              190       200       210       220       230    

>>XP_011507406 (OMIM: 604463) PREDICTED: CD160 antigen i  (234 aa)
 initn: 1213 init1: 1196 opt: 1196  Z-score: 1512.9  bits: 286.9 E(85289): 1.6e-77
Smith-Waterman score: 1196; 98.9% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQG
              130       140       150       160       170       180

                                                             
pF1KE1 L                                                     
       .                                                     
XP_011 MSKRAVSTPSNEGAIIFLPPWLFSRRRRLERMSRGREKCYSSPGYPQESSNQFH
              190       200       210       220       230    




181 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:57:33 2016 done: Sun Nov  6 22:57:34 2016
 Total Scan time:  5.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]