FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1513, 181 aa
  1>>>pF1KE1513 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3282+/-0.000689; mu= 12.0876+/- 0.041
 mean_var=60.9555+/-12.267, 0's: 0 Z-trim(108.3): 24  B-trim: 0 in 0/51
 Lambda= 0.164274
 statistics sampled from 10147 (10155) to 10147 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS72861.1 CD160 gene_id:11126|Hs108|chr1         ( 181) 1203 293.2 5.9e-80


>>CCDS72861.1 CD160 gene_id:11126|Hs108|chr1              (181 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1549.0  bits: 293.2 E(32554): 5.9e-80
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA
              130       140       150       160       170       180

        
pF1KE1 L
       :
CCDS72 L
        




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:57:33 2016 done: Sun Nov  6 22:57:33 2016
 Total Scan time:  2.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]