FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1507, 295 aa
  1>>>pF1KE1507 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3776+/-0.000996; mu= 14.9705+/- 0.059
 mean_var=63.4518+/-12.795, 0's: 0 Z-trim(103.7): 30  B-trim: 373 in 1/50
 Lambda= 0.161010
 statistics sampled from 7488 (7515) to 7488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5            ( 295) 1931 457.3 6.1e-129
CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4            ( 344)  972 234.6   8e-62
CCDS3580.1 CCNI gene_id:10983|Hs108|chr4           ( 377)  369 94.5 1.3e-19
CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5        ( 369)  288 75.7 5.7e-14


>>CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5                 (295 aa)
 initn: 1931 init1: 1931 opt: 1931  Z-score: 2428.4  bits: 457.3 E(32554): 6.1e-129
Smith-Waterman score: 1931; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KE1 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGRDLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGRDLTF
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KE1 WQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP
              250       260       270       280       290     

>>CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4                 (344 aa)
 initn: 972 init1: 498 opt: 972  Z-score: 1223.4  bits: 234.6 E(32554): 8e-62
Smith-Waterman score: 972; 52.8% identity (79.3% similar) in 290 aa overlap (3-292:7-295)

                   10        20        30        40        50      
pF1KE1     MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEV
             : :.  .. .::  ::. :::: : ::.  :: :::.. .:   .   ::. .:
CCDS35 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE1 KDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVP
       .:: ::..:::  :::: ::::.:::::. :::.::::.:.:.  : ::.. .::. :.:
CCDS35 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE1 LATDLIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNS
        . :.::::: . :.::. :::::. ::. ....::::..::.::....  .   ::.. 
CCDS35 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTS-ERKEI
              130       140       150       160       170          

        180       190       200       210       220       230      
pF1KE1 INFERLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGR
       .....::::::::.::.:::::::::::: .. ::... : ::: : .  ..::::::  
CCDS35 LSLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT
     180       190       200       210       220       230         

        240       250       260       270       280       290      
pF1KE1 DLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP 
       .. .:.:::::::.:::: .: ::...:: :::: :::..:..::: . .::::::    
CCDS35 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF
     240       250       260       270       280       290         

CCDS35 DESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS
     300       310       320       330       340    

>>CCDS3580.1 CCNI gene_id:10983|Hs108|chr4                (377 aa)
 initn: 359 init1: 308 opt: 369  Z-score: 465.8  bits: 94.5 E(32554): 1.3e-19
Smith-Waterman score: 369; 31.0% identity (65.1% similar) in 255 aa overlap (9-255:8-253)

               10        20        30        40        50        60
pF1KE1 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL
               ..:.:   :.  . .:..   :: ..: . : ..    ..   ::  .. : 
CCDS35  MKFPGPLENQRLSFLLEKAITREAQMW-KV-NVRKMPSNQN----VSPSQRDEVIQWLA
                10        20          30            40        50   

               70        80        90       100       110       120
pF1KE1 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD
       .:   :..  :::.:: .::::::. .:..::.:.:...:::.::.:..::.. .:.   
CCDS35 KLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKV
            60        70        80        90       100       110   

              130       140       150       160              170   
pF1KE1 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSL-------LQENLPLER
       : : :    . :...:::.:.:.:. : ....: ..::......       :  .:: . 
CCDS35 LARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLP-KL
           120       130       140       150       160       170   

           180       190        200       210       220       230  
pF1KE1 RNSINFERLEAQLKACH-CRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSK
         : ..  :  ::  :  :  .. . . :.:::....::..      :.  :: ::: ..
CCDS35 SPSQHLAVLTKQLLHCMACNQLL-QFRGSMLALAMVSLEMEKLIPDWLSLTIELLQK-AQ
            180       190        200       210       220        230

            240       250       260       270       280       290  
pF1KE1 INGRDLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPE
       ... .:   .:::.. :.  .:.                                     
CCDS35 MDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFS
              240       250       260       270       280       290

>>CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5             (369 aa)
 initn: 272 init1: 216 opt: 288  Z-score: 364.3  bits: 75.7 E(32554): 5.7e-14
Smith-Waterman score: 293; 29.2% identity (61.2% similar) in 209 aa overlap (59-258:157-361)

       30        40        50        60        70        80        
pF1KE1 PKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMK
                                     :: : . : :.  ::.::.... :.: ..:
CCDS34 QLAQDREARLWRGGKPQDEICDAFEEVVLWLLRLQNTFYFSQSTFNLALTIFGRLLISVK
        130       140       150       160       170       180      

       90       100       110       120       130       140        
pF1KE1 VQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSDLMRMEKIVLEKVCWK
       :. :.: :. .. . ::.:  :::. .: . :. .     .. ..:.:::  .:... : 
CCDS34 VKEKYLHCATITSLRLAAKVNEEEEFIPQVKDFTKHYGSDYSPNELLRMELAILDRLHWD
        190       200       210       220       230       240      

      150       160       170             180       190       200  
pF1KE1 VKATTAFQFLQLYYSLLQENLP-----LERRN-SINFERLEAQLKACHCRIIFSKAKPSV
       .   : ..:: ....:.  . :     : .:: :..   :  ::. :     . . : :.
CCDS34 LYIGTPLDFLTIFHALVVLSWPHVLELLPQRNPSLHVASLTRQLQHCMAGHQLLQFKGST
        250       260       270       280       290       300      

            210          220       230       240       250         
pF1KE1 LALSIIALEIQAQK---CVELTEGIECLQKHSKINGRDLTFWQELVSKCLTEYSSNKCSK
       ::: ::.::..      :. ...    : :.....  . .  .::: . :   .:..:. 
CCDS34 LALVIITLELERLMPGWCAPISD----LLKKAQVGDMQYSCCKELVMQQLRSLQSSSCTD
        310       320           330       340       350       360  

     260       270       280       290     
pF1KE1 PNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP
                                           
CCDS34 NFVSPAN                             
                                           




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:38:16 2016 done: Sun Nov  6 23:38:17 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]