FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1505, 496 aa
  1>>>pF1KE1505 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1499+/-0.000792; mu= 13.7760+/- 0.048
 mean_var=71.1260+/-14.486, 0's: 0 Z-trim(108.4): 14  B-trim: 184 in 1/49
 Lambda= 0.152076
 statistics sampled from 10154 (10166) to 10154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS6430.1 GPT gene_id:2875|Hs108|chr8             ( 496) 3294 731.7 4.3e-211
CCDS10725.1 GPT2 gene_id:84706|Hs108|chr16         ( 523) 2363 527.5 1.4e-149
CCDS45478.1 GPT2 gene_id:84706|Hs108|chr16         ( 423) 2091 467.8  1e-131


>>CCDS6430.1 GPT gene_id:2875|Hs108|chr8                  (496 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 3903.3  bits: 731.7 E(32554): 4.3e-211
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KE1 MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRALELEQELRQGVKKPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRALELEQELRQGVKKPF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKKRAERILQACGGHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKKRAERILQACGGHSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALGQARDHCRPRALCVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALGQARDHCRPRALCVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQFHSFKKVLMEMGPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 NPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQFHSFKKVLMEMGPPY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSVRLCPPVPGQALLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSVRLCPPVPGQALLDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 VVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLL
              430       440       450       460       470       480

              490      
pF1KE1 LEKLSRFHAKFTLEYS
       ::::::::::::::::
CCDS64 LEKLSRFHAKFTLEYS
              490      

>>CCDS10725.1 GPT2 gene_id:84706|Hs108|chr16              (523 aa)
 initn: 2387 init1: 2350 opt: 2363  Z-score: 2799.0  bits: 527.5 E(32554): 1.4e-149
Smith-Waterman score: 2363; 69.0% identity (90.2% similar) in 480 aa overlap (17-496:44-523)

                             10        20        30        40      
pF1KE1               MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRAL
                                     : ..:::..:::.:. :::::::::: .: 
CCDS10 PRTPSSWGRSQSSAAAEASAVLKVRPERSRRERILTLESMNPQVKAVEYAVRGPIVLKAG
            20        30        40        50        60        70   

         50        60        70        80        90       100      
pF1KE1 ELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKK
       :.: ::..:.::::::::::::::::::::.::::::::.:::. :.::.::.::.::::
CCDS10 EIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKK
            80        90       100       110       120       130   

        110       120       130       140       150       160      
pF1KE1 RAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVT
       ::.::::::::.:::.::.:.:.. :::::: :: :::::.::::.:..:.:::::.: :
CCDS10 RARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGIST
           140       150       160       170       180       190   

        170       180       190       200       210       220      
pF1KE1 VLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALG
       .::.::.: :..::::.:::::::::::...:: :.::.::::::  :::.: ::.::. 
CCDS10 ILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQ
           200       210       220       230       240       250   

        230       240       250       260       270       280      
pF1KE1 QARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQF
       .:.::: :..::.:::::::::::.:.::: ::.::.::.::::::::::::::.   .:
CCDS10 EAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRF
           260       270       280       290       300       310   

        290       300       310       320       330       340      
pF1KE1 HSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSV
       :::::::.:::: :... :::::::::::::::::.::::.::.:.   .. :..::.::
CCDS10 HSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV
           320       330       340       350       360       370   

        350       360       370       380       390       400      
pF1KE1 RLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCN
       :::::: ::: .:.::.::.  . :: ::. ::..::..:: ::::::..::..::: ::
CCDS10 RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN
           380       390       400       410       420       430   

        410       420       430       440       450       460      
pF1KE1 PVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHF
       :.:::::.:::. .: .::: ::   .:::::.:..::::::::::::::::::::::::
CCDS10 PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHF
           440       450       460       470       480       490   

        470       480       490      
pF1KE1 RMTILPPLEKLRLLLEKLSRFHAKFTLEYS
       :::::::.:::. .:.:.. :: .:  .:.
CCDS10 RMTILPPVEKLKTVLQKVKDFHINFLEKYA
           500       510       520   

>>CCDS45478.1 GPT2 gene_id:84706|Hs108|chr16              (423 aa)
 initn: 2128 init1: 2091 opt: 2091  Z-score: 2478.0  bits: 467.8 E(32554): 1e-131
Smith-Waterman score: 2091; 68.6% identity (90.1% similar) in 423 aa overlap (74-496:1-423)

            50        60        70        80        90       100   
pF1KE1 RALELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPNFPDD
                                     :::.::::::::.:::. :.::.::.::.:
CCDS45                               MGQQPITFLRQVMALCTYPNLLDSPSFPED
                                             10        20        30

           110       120       130       140       150       160   
pF1KE1 AKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDA
       :::::.::::::::.:::.::.:.:.. :::::: :: :::::.::::.:..:.:::::.
CCDS45 AKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDG
               40        50        60        70        80        90

           170       180       190       200       210       220   
pF1KE1 IVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHR
       : :.::.::.: :..::::.:::::::::::...:: :.::.::::::  :::.: ::.:
CCDS45 ISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRR
              100       110       120       130       140       150

           230       240       250       260       270       280   
pF1KE1 ALGQARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAG
       :. .:.::: :..::.:::::::::::.:.::: ::.::.::.::::::::::::::.  
CCDS45 AVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD
              160       170       180       190       200       210

           290       300       310       320       330       340   
pF1KE1 SQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKL
        .::::::::.:::: :... :::::::::::::::::.::::.::.:.   .. :..::
CCDS45 CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL
              220       230       240       250       260       270

           350       360       370       380       390       400   
pF1KE1 MSVRLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGI
       .:::::::: ::: .:.::.::.  . :: ::. ::..::..:: ::::::..::..:::
CCDS45 LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGI
              280       290       300       310       320       330

           410       420       430       440       450       460   
pF1KE1 SCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGT
        :::.:::::.:::. .: .::: ::   .:::::.:..:::::::::::::::::::::
CCDS45 HCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGT
              340       350       360       370       380       390

           470       480       490      
pF1KE1 YHFRMTILPPLEKLRLLLEKLSRFHAKFTLEYS
       ::::::::::.:::. .:.:.. :: .:  .:.
CCDS45 YHFRMTILPPVEKLKTVLQKVKDFHINFLEKYA
              400       410       420   




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:47:10 2016 done: Sun Nov  6 22:47:10 2016
 Total Scan time:  3.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]