FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1500, 767 aa
  1>>>pF1KE1500 767 - 767 aa - 767 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.2800+/-0.00175; mu= -26.4924+/- 0.102
 mean_var=604.1156+/-129.627, 0's: 0 Z-trim(107.7): 185  B-trim: 0 in 0/52
 Lambda= 0.052181
 statistics sampled from 9622 (9753) to 9622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.3), width:  16
 Scan time:  4.300

The best scores are:                                      opt bits E(32554)
CCDS6860.1 GOLGA1 gene_id:2800|Hs108|chr9          ( 767) 4764 374.7  3e-103


>>CCDS6860.1 GOLGA1 gene_id:2800|Hs108|chr9               (767 aa)
 initn: 4764 init1: 4764 opt: 4764  Z-score: 1967.1  bits: 374.7 E(32554): 3e-103
Smith-Waterman score: 4764; 99.7% identity (99.9% similar) in 767 aa overlap (1-767:1-767)

               10        20        30        40        50        60
pF1KE1 MFAKLKKKIAEETAVAQRPGGATRIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MFAKLKKKIAEETAVAQRPGGATRIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LSKIKHMLLKKEESLGKMEQELEARTRELSRTQEELMNSNQMSSDLSQKLEELQRHYSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LSKIKHMLLKKEESLGKMEQELEARTRELSRTQEELMNSNQMSSDLSQKLEELQRHYSTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 EEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHLQEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHLQEKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 ASLEKRLEQNLSGEEHVQELLKEKTLAEQNLEDTRQQLLAARSSQAKAINTLETRVRELE
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS68 ASLEKRLEQNLSGEEHLQELLKEKTLAEQNLEDTRQQLLAARSSQAKAINTLETRVRELE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QTLQASEEQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QTLQASEEQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 ALERMRAADQTTAEQGMRQLEQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIVSV
       :::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ALERTRAADQTTAEQGMRQLEQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIVSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 AMAQALEEVRKQREEFQQQAANLTAIIDEKEQNLREKTEVLLQKEQEILQLERGHNSALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AMAQALEEVRKQREEFQQQAANLTAIIDEKEQNLREKTEVLLQKEQEILQLERGHNSALL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 QIHQLQAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAEALSVNESHVTSRAMQDPVFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QIHQLQAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAEALSVNESHVTSRAMQDPVFQL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 PTAGRTPNGEVGAMDLTQLQKEKQDLEQQLLEKNKTIKQMQQRMLELRKTLQKELKIRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PTAGRTPNGEVGAMDLTQLQKEKQDLEQQLLEKNKTIKQMQQRMLELRKTLQKELKIRPD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 NELFEVREKPGPEMANMAPSVTNNTDLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NELFEVREKPGPEMANMAPSVTNNTDLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAV
              670       680       690       700       710       720

              730       740       750       760       
pF1KE1 SVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISNPRIPWS
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISNPRIPWS
              730       740       750       760       




767 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:22:38 2016 done: Sun Nov  6 22:22:39 2016
 Total Scan time:  4.300 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]