FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1496, 108 aa
  1>>>pF1KE1496 108 - 108 aa - 108 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1565+/-0.000724; mu= 10.1467+/- 0.043
 mean_var=70.3432+/-14.056, 0's: 0 Z-trim(109.9): 60  B-trim: 328 in 1/51
 Lambda= 0.152920
 statistics sampled from 11179 (11231) to 11179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.345), width:  16
 Scan time:  1.270

The best scores are:                                      opt bits E(32554)
CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22          ( 108)  797 184.1 1.4e-47
CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3            ( 113)  392 94.8 1.1e-20
CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17      (  84)  279 69.8 2.9e-13


>>CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22               (108 aa)
 initn: 797 init1: 797 opt: 797  Z-score: 967.7  bits: 184.1 E(32554): 1.4e-47
Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
               10        20        30        40        50        60

               70        80        90       100        
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
               70        80        90       100        

>>CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3                 (113 aa)
 initn: 392 init1: 220 opt: 392  Z-score: 484.5  bits: 94.8 E(32554): 1.1e-20
Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (11-107:20-112)

                        10        20        30        40        50 
pF1KE1          MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD
                          ::..:: : : : .:::::::.:.::.  :.::::: ..::
CCDS31 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD
               10        20         30        40        50         

              60        70        80        90       100        
pF1KE1 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
        :..:::..    .:.:.:.:: :::.::  :.: :.:  . ::: ...:  :. : 
CCDS31 ACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
      60           70        80        90       100       110   

>>CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17           (84 aa)
 initn: 270 init1: 139 opt: 279  Z-score: 351.6  bits: 69.8 E(32554): 2.9e-13
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)

               10        20        30        40        50        60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
                           . ..: ::.:: : :    .::.:::  .   : .:.   
CCDS11                    MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
                                  10        20        30           

               70        80        90          100        
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
         . ...: ..:: :.: ::.::: .::...::   ::.  .::.:..   
CCDS11 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE   
         40        50        60        70        80       




108 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:40:23 2016 done: Mon Nov  7 03:40:23 2016
 Total Scan time:  1.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]