Result of FASTA (omim) for
pFN21AE1491
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1491, 407 aa
1>>>pF1KE1491 407 - 407 aa - 407 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.3089+/-0.000359; mu= -14.5613+/- 0.022
mean_var=374.4809+/-78.231, 0's: 0 Z-trim(124.2): 15 B-trim: 0 in 0/60
Lambda= 0.066276
statistics sampled from 45476 (45491) to 45476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.533), width: 16
Scan time: 10.540
The best scores are: opt bits E(85289)
XP_005260314 (OMIM: 610650) PREDICTED: proteasomal ( 407) 2682 269.8 8.3e-72
NP_783163 (OMIM: 610650) proteasomal ubiquitin rec ( 407) 2682 269.8 8.3e-72
NP_008933 (OMIM: 610650) proteasomal ubiquitin rec ( 407) 2682 269.8 8.3e-72
XP_016883092 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71
XP_016883091 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71
XP_016883093 (OMIM: 610650) PREDICTED: proteasomal ( 414) 2658 267.6 4.1e-71
XP_011526805 (OMIM: 610650) PREDICTED: proteasomal ( 369) 2232 226.8 6.9e-59
XP_016883094 (OMIM: 610650) PREDICTED: proteasomal ( 376) 2208 224.5 3.4e-58
NP_001268366 (OMIM: 610650) proteasomal ubiquitin ( 368) 1924 197.3 5e-50
NP_001268367 (OMIM: 610650) proteasomal ubiquitin ( 368) 1924 197.3 5e-50
XP_016883096 (OMIM: 610650) PREDICTED: proteasomal ( 375) 1900 195.0 2.5e-49
XP_016883095 (OMIM: 610650) PREDICTED: proteasomal ( 375) 1900 195.0 2.5e-49
XP_016883098 (OMIM: 610650) PREDICTED: proteasomal ( 275) 1761 181.7 2e-45
XP_016883097 (OMIM: 610650) PREDICTED: proteasomal ( 282) 1737 179.4 9.8e-45
XP_016883099 (OMIM: 610650) PREDICTED: proteasomal ( 237) 1311 138.6 1.5e-32
>>XP_005260314 (OMIM: 610650) PREDICTED: proteasomal ubi (407 aa)
initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72
Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
310 320 330 340 350 360
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400
>>NP_783163 (OMIM: 610650) proteasomal ubiquitin recepto (407 aa)
initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72
Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
310 320 330 340 350 360
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_783 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400
>>NP_008933 (OMIM: 610650) proteasomal ubiquitin recepto (407 aa)
initn: 2682 init1: 2682 opt: 2682 Z-score: 1410.1 bits: 269.8 E(85289): 8.3e-72
Smith-Waterman score: 2682; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
310 320 330 340 350 360
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400
>>XP_016883092 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa)
initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71
Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA
:::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400 410
>>XP_016883091 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa)
initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71
Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA
:::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400 410
>>XP_016883093 (OMIM: 610650) PREDICTED: proteasomal ubi (414 aa)
initn: 1423 init1: 1423 opt: 2658 Z-score: 1397.6 bits: 267.6 E(85289): 4.1e-71
Smith-Waterman score: 2658; 98.3% identity (98.3% similar) in 414 aa overlap (1-407:1-414)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA
:::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
370 380 390 400 410
>>XP_011526805 (OMIM: 610650) PREDICTED: proteasomal ubi (369 aa)
initn: 2232 init1: 2232 opt: 2232 Z-score: 1178.2 bits: 226.8 E(85289): 6.9e-59
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::
XP_011 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQMWKRLPKPCRTTPSPSRKRATR
310 320 330 340 350 360
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
XP_011 RTRRTKRRT
>>XP_016883094 (OMIM: 610650) PREDICTED: proteasomal ubi (376 aa)
initn: 1696 init1: 1415 opt: 2208 Z-score: 1165.7 bits: 224.5 E(85289): 3.4e-58
Smith-Waterman score: 2208; 98.0% identity (98.0% similar) in 345 aa overlap (1-338:1-345)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSS-------SRSQSAAVTPSSTTSSTRATPAPSA
:::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 GGLGALTGPGLASLLGSSGPPGSSSSSSGALSLRSSRSQSAAVTPSSTTSSTRATPAPSA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLG
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQMWKRLPKPCRTTPSP
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 PLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
XP_016 SRKRATRRTRRTKRRT
370
>>NP_001268366 (OMIM: 610650) proteasomal ubiquitin rece (368 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1019.1 bits: 197.3 E(85289): 5e-50
Smith-Waterman score: 2308; 90.4% identity (90.4% similar) in 407 aa overlap (1-407:1-368)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::: ::::::::::
NP_001 WKDRTSGNVED---------------------------------------EPKTDQDEEH
70 80
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
270 280 290 300 310 320
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
330 340 350 360
>>NP_001268367 (OMIM: 610650) proteasomal ubiquitin rece (368 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1019.1 bits: 197.3 E(85289): 5e-50
Smith-Waterman score: 2308; 90.4% identity (90.4% similar) in 407 aa overlap (1-407:1-368)
10 20 30 40 50 60
pF1KE1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
::::::::::: ::::::::::
NP_001 WKDRTSGNVED---------------------------------------EPKTDQDEEH
70 80
130 140 150 160 170 180
pF1KE1 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
270 280 290 300 310 320
370 380 390 400
pF1KE1 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
330 340 350 360
407 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:04:24 2016 done: Mon Nov 7 01:04:25 2016
Total Scan time: 10.540 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]