FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1490, 670 aa
  1>>>pF1KE1490 670 - 670 aa - 670 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.7731+/-0.00116; mu= -22.6606+/- 0.070
 mean_var=567.9302+/-118.625, 0's: 0 Z-trim(116.7): 85  B-trim: 453 in 1/53
 Lambda= 0.053818
 statistics sampled from 17318 (17398) to 17318 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.534), width:  16
 Scan time:  5.090

The best scores are:                                      opt bits E(32554)
CCDS45954.2 PRAM1 gene_id:84106|Hs108|chr19        ( 670) 4725 381.7 1.9e-105


>>CCDS45954.2 PRAM1 gene_id:84106|Hs108|chr19             (670 aa)
 initn: 4725 init1: 4725 opt: 4725  Z-score: 2006.7  bits: 381.7 E(32554): 1.9e-105
Smith-Waterman score: 4725; 99.9% identity (100.0% similar) in 670 aa overlap (1-670:1-670)

               10        20        30        40        50        60
pF1KE1 MAHHLPAAMENHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAP
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAHHLPAAMESHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPEFGAVSLKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPEFGAVSLKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KLELSDLSKKFPQLGATPFPRKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLELSDLSKKFPQLGATPFPRKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SEPKSGAFPRKLWQPEAGEATPRSPQPELSTFPKKPAQPEFNVYPKKPPQPQVGGLPKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SEPKSGAFPRKLWQPEAGEATPRSPQPELSTFPKKPAQPEFNVYPKKPPQPQVGGLPKKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VPQPEFSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFPKKPPQPELGDLTRTSSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPQPEFSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFPKKPPQPELGDLTRTSSEP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EVSVLPKRPRPAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EVSVLPKRPRPAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 EPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTPRWRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTPRWRS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 GGLVHSGGARPGLRPSHPPRRRPLPPASSLGHPPAKPPLPPGPVDMQSFRRPSAASIDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGLVHSGGARPGLRPSHPPRRRPLPPASSLGHPPAKPPLPPGPVDMQSFRRPSAASIDLR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 RTRSAAGLHFQDRQPEDIPQVPDEIYELYDDVEPRDDSSPSPKGRDEAPSVQQAARRPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RTRSAAGLHFQDRQPEDIPQVPDEIYELYDDVEPRDDSSPSPKGRDEAPSVQQAARRPPQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 DPALRKEKDPQPQQLPPMDPKLLKQLRKAEKAEREFRKKFKFEGEIVVHTKMMIDPNAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DPALRKEKDPQPQQLPPMDPKLLKQLRKAEKAEREFRKKFKFEGEIVVHTKMMIDPNAKT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 RRGGGKHLGIRRGEILEVIEFTSNEEMLCRDPKGKYGYVPRTALLPLETEVYDDVDFCDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RRGGGKHLGIRRGEILEVIEFTSNEEMLCRDPKGKYGYVPRTALLPLETEVYDDVDFCDP
              610       620       630       640       650       660

              670
pF1KE1 LENQPLPLGR
       ::::::::::
CCDS45 LENQPLPLGR
              670




670 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:22:31 2016 done: Mon Nov  7 00:22:31 2016
 Total Scan time:  5.090 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]