Result of FASTA (omim) for
pFN21AE1487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1487, 165 aa
1>>>pF1KE1487 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8108+/-0.000317; mu= 14.9222+/- 0.020
mean_var=61.1324+/-12.075, 0's: 0 Z-trim(116.6): 44 B-trim: 725 in 2/51
Lambda= 0.164036
statistics sampled from 27904 (27948) to 27904 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.328), width: 16
Scan time: 5.140
The best scores are: opt bits E(85289)
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 1073 261.8 3.7e-70
NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11
NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11
NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11
NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11
NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 251 67.3 1.7e-11
NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 251 67.7 4.1e-11
XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 195 54.0 1.5e-07
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 188 52.3 3.5e-07
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 183 51.1 7.7e-07
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07
XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07
XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07
XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07
XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 170 48.0 7.6e-06
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 170 48.0 7.6e-06
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 170 48.0 7.6e-06
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 171 48.6 1.3e-05
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 171 48.6 1.6e-05
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 148 42.9 0.00029
NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133) 143 41.6 0.00056
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 127 37.9 0.0088
>>NP_005092 (OMIM: 147571,616126) ubiquitin-like protein (165 aa)
initn: 1073 init1: 1073 opt: 1073 Z-score: 1380.5 bits: 261.8 E(85289): 3.7e-70
Smith-Waterman score: 1073; 99.4% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_005 ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD
70 80 90 100 110 120
130 140 150 160
pF1KE1 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
:::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
130 140 150 160
>>NP_001268647 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_001 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_001268648 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_001 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_001268649 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_001 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_001268646 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_001 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_061828 (OMIM: 119540,191339) polyubiquitin-B precur (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_061 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_061 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_061 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_061 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_061 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_061 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_061 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_001268645 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa)
initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_001 LRLRGGC
>--
initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens (685 aa)
initn: 157 init1: 157 opt: 251 Z-score: 320.5 bits: 67.7 E(85289): 4.1e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_066 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_066 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_066 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
170 180 190 200 210 220
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_066 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
230 240 250 260 270 280
>--
initn: 226 init1: 157 opt: 251 Z-score: 320.5 bits: 67.7 E(85289): 4.1e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:380-532)
10 20 30
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
: .. :: :.:. . . . : .. ..::.
NP_066 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
350 360 370 380 390 400
40 50 60 70 80 90
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
: .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. :
NP_066 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
410 420 430 440 450 460
100 110 120 130 140 150
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
.. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. .
NP_066 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
470 480 490 500 510 520
160
pF1KE1 LRLRGGGTEPGGRS
::::::
NP_066 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
530 540 550 560 570 580
>--
initn: 216 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05
Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:229-304)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
200 210 220 230 240 250
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . ::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
260 270 280 290 300 310
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
320 330 340 350 360 370
>--
initn: 224 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05
Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:533-608)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
510 520 530 540 550 560
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . ::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
570 580 590 600 610 620
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
630 640 650 660 670 680
>--
initn: 157 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05
Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:609-684)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
580 590 600 610 620 630
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . ::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV
640 650 660 670 680
>--
initn: 149 init1: 149 opt: 161 Z-score: 205.4 bits: 46.4 E(85289): 0.00011
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:305-379)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
280 290 300 310 320 330
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
340 350 360 370 380 390
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
400 410 420 430 440 450
>--
initn: 149 init1: 149 opt: 161 Z-score: 205.4 bits: 46.4 E(85289): 0.00011
Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75)
60 70 80 90 100 110
pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV
..:.:.. :.. : ::. ..:. ..: ..
NP_066 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
10 20 30
120 130 140 150 160
pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
. ::. : : : :: ::: :..:... ::. . :::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
40 50 60 70 80 90
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
100 110 120 130 140 150
>>XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-60S r (203 aa)
initn: 219 init1: 157 opt: 195 Z-score: 256.3 bits: 54.0 E(85289): 1.5e-07
Smith-Waterman score: 195; 33.1% identity (60.6% similar) in 127 aa overlap (41-164:8-130)
20 30 40 50 60
pF1KE1 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG---P
: .:::. .. : :: . . : .
XP_016 MCVVGDGFPSRLAAG-AACADQDLAAVEEGGTAFRED
10 20 30
70 80 90 100 110 120
pF1KE1 GSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE
::. .. : ..:.:.. :.. : ::. ..:. ..: ... ::. : : :
XP_016 GSSKMM---PKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA
40 50 60 70 80 90
130 140 150 160
pF1KE1 GKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
:: ::: :..:... ::. . :::::: ::. :
XP_016 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWG
100 110 120 130 140 150
XP_016 AVGAAGVGVCPHPPLLSLCRCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
160 170 180 190 200
>>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa)
initn: 219 init1: 157 opt: 188 Z-score: 249.9 bits: 52.3 E(85289): 3.5e-07
Smith-Waterman score: 188; 37.2% identity (66.3% similar) in 86 aa overlap (79-164:5-90)
50 60 70 80 90 100
pF1KE1 PSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLK
: ..:.:.. :.. : ::. ..:. ..:
NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVK
10 20 30
110 120 130 140 150 160
pF1KE1 QQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
... ::. : : : :: ::: :..:... ::. . :::::: ::. :
NP_001 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQ
40 50 60 70 80 90
NP_001 KYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
100 110 120 130
165 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:03:29 2016 done: Mon Nov 7 02:03:29 2016
Total Scan time: 5.140 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]