FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1487, 165 aa
  1>>>pF1KE1487 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3177+/-0.000677; mu= 11.8761+/- 0.041
 mean_var=61.4223+/-12.095, 0's: 0 Z-trim(109.5): 22  B-trim: 0 in 0/50
 Lambda= 0.163648
 statistics sampled from 10888 (10906) to 10888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.335), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS6.1 ISG15 gene_id:9636|Hs108|chr1              ( 165) 1073 261.3   2e-70
CCDS11177.1 UBB gene_id:7314|Hs108|chr17           ( 229)  251 67.2   7e-12
CCDS9260.1 UBC gene_id:7316|Hs108|chr12            ( 685)  251 67.5 1.8e-11


>>CCDS6.1 ISG15 gene_id:9636|Hs108|chr1                   (165 aa)
 initn: 1073 init1: 1073 opt: 1073  Z-score: 1377.8  bits: 261.3 E(32554): 2e-70
Smith-Waterman score: 1073; 99.4% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS6. MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS6. ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD
               70        80        90       100       110       120

              130       140       150       160     
pF1KE1 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS6. LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
              130       140       150       160     

>>CCDS11177.1 UBB gene_id:7314|Hs108|chr17                (229 aa)
 initn: 226 init1: 157 opt: 251  Z-score: 326.8  bits: 67.2 E(32554): 7e-12
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)

                                            10        20        30 
pF1KE1                              MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
                                     : .. :: :.:. . . .  : .. ..::.
CCDS11 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
          50        60        70        80        90       100     

              40        50        60        70        80        90 
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
       : .: :.   ::::    .:  :.:   :.. ..   ::. ::. .    ..:.:..  :
CCDS11 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
         110       120         130       140        150       160  

             100       110       120       130       140       150 
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
       .. : ::. ..:. ..: ...  ::.  :   : : :: :::   :..:...  ::. . 
CCDS11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
            170       180       190       200       210       220  

             160     
pF1KE1 LRLRGGGTEPGGRS
       ::::::        
CCDS11 LRLRGGC       
                     

>>CCDS9260.1 UBC gene_id:7316|Hs108|chr12                 (685 aa)
 initn: 157 init1: 157 opt: 251  Z-score: 319.3  bits: 67.5 E(32554): 1.8e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228)

                                            10        20        30 
pF1KE1                              MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
                                     : .. :: :.:. . . .  : .. ..::.
CCDS92 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
          50        60        70        80        90       100     

              40        50        60        70        80        90 
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
       : .: :.   ::::    .:  :.:   :.. ..   ::. ::. .    ..:.:..  :
CCDS92 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
         110       120         130       140        150       160  

             100       110       120       130       140       150 
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
       .. : ::. ..:. ..: ...  ::.  :   : : :: :::   :..:...  ::. . 
CCDS92 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
            170       180       190       200       210       220  

             160                                                   
pF1KE1 LRLRGGGTEPGGRS                                              
       ::::::                                                      
CCDS92 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
            230       240       250       260       270       280  

>--
 initn: 226 init1: 157 opt: 251  Z-score: 319.3  bits: 67.5 E(32554): 1.8e-11
Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:380-532)

                                            10        20        30 
pF1KE1                              MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ
                                     : .. :: :.:. . . .  : .. ..::.
CCDS92 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK
     350       360       370       380       390       400         

              40        50        60        70        80        90 
pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG
       : .: :.   ::::    .:  :.:   :.. ..   ::. ::. .    ..:.:..  :
CCDS92 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG
     410       420         430       440       450        460      

             100       110       120       130       140       150 
pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN
       .. : ::. ..:. ..: ...  ::.  :   : : :: :::   :..:...  ::. . 
CCDS92 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
        470       480       490       500       510       520      

             160                                                   
pF1KE1 LRLRGGGTEPGGRS                                              
       ::::::                                                      
CCDS92 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
        530       540       550       560       570       580      




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:03:28 2016 done: Mon Nov  7 02:03:28 2016
 Total Scan time:  1.980 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]