FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1484, 655 aa
  1>>>pF1KE1484 655 - 655 aa - 655 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4091+/-0.00113; mu= -2.4415+/- 0.068
 mean_var=323.3238+/-66.357, 0's: 0 Z-trim(112.8): 120  B-trim: 135 in 2/52
 Lambda= 0.071327
 statistics sampled from 13382 (13499) to 13382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.415), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(32554)
CCDS11845.1 RALBP1 gene_id:10928|Hs108|chr18       ( 655) 4275 454.0 2.9e-127


>>CCDS11845.1 RALBP1 gene_id:10928|Hs108|chr18            (655 aa)
 initn: 4275 init1: 4275 opt: 4275  Z-score: 2398.2  bits: 454.0 E(32554): 2.9e-127
Smith-Waterman score: 4275; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655)

               10        20        30        40        50        60
pF1KE1 MTECFLPPTSSPSEHRRVEHGSGLTRTPSSEEISPTKFPGLYRTGEPSPPHDILHEPPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTECFLPPTSSPSEHRRVEHGSGLTRTPSSEEISPTKFPGLYRTGEPSPPHDILHEPPDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VSDDEKDHGKKKGKFKKKEKRTEGYAAFQEDSSGDEAESPSKMKRSKGIHVFKKPSFSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSDDEKDHGKKKGKFKKKEKRTEGYAAFQEDSSGDEAESPSKMKRSKGIHVFKKPSFSKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEKDFKIKEKPKEEKHKEEKHKEEKHKEKKSKDLTAADVVKQWKEKKKKKKPIQEPEVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KEKDFKIKEKPKEEKHKEEKHKEEKHKEKKSKDLTAADVVKQWKEKKKKKKPIQEPEVPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IDVPNLKPIFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IDVPNLKPIFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DELKAAYDREESTNLEDYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTETEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DELKAAYDREESTNLEDYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTETEKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNIQNISIVLSPTVQISNRVLYVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNIQNISIVLSPTVQISNRVLYVF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FTHVQELFGNVVLKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTHVQELFGNVVLKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 KDLSKEERLWEVQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KDLSKEERLWEVQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVIN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 ILLAQENEILTEQEELLAMEQFLRRQIASEKEEIERLRAEIAEIQSRQQHGRSETEEYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILLAQENEILTEQEELLAMEQFLRRQIASEKEEIERLRAEIAEIQSRQQHGRSETEEYSS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 ESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELRVQLRLLQMQRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELRVQLRLLQMQRAK
              550       560       570       580       590       600

              610       620       630       640       650     
pF1KE1 AEQQAQEDEEPEWRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRDRKETSI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEQQAQEDEEPEWRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRDRKETSI
              610       620       630       640       650     




655 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:36:00 2016 done: Mon Nov  7 01:36:00 2016
 Total Scan time:  4.380 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]