FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1480, 97 aa
  1>>>pF1KE1480 97 - 97 aa - 97 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8525+/-0.000258; mu= 11.6392+/- 0.016
 mean_var=53.0883+/-10.409, 0's: 0 Z-trim(120.2): 11  B-trim: 234 in 1/55
 Lambda= 0.176025
 statistics sampled from 35021 (35034) to 35021 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.411), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(85289)
NP_000896 (OMIM: 162640) pro-neuropeptide Y prepro (  97)  637 168.5 1.5e-42
NP_004151 (OMIM: 600781) peptide YY preproprotein  (  97)  338 92.6 1.1e-19
XP_011523337 (OMIM: 600781) PREDICTED: peptide YY  (  97)  327 89.8 7.6e-19
NP_001306138 (OMIM: 167780) pancreatic prohormone  ( 101)  178 51.9 1.9e-07
NP_002713 (OMIM: 167780) pancreatic prohormone iso (  95)  175 51.2 3.1e-07
XP_011523280 (OMIM: 167780) PREDICTED: pancreatic  ( 104)  175 51.2 3.4e-07


>>NP_000896 (OMIM: 162640) pro-neuropeptide Y preproprot  (97 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 884.8  bits: 168.5 E(85289): 1.5e-42
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       :::::::::::::::::::::::::::::::::::::
NP_000 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
               70        80        90       

>>NP_004151 (OMIM: 600781) peptide YY preproprotein [Hom  (97 aa)
 initn: 320 init1: 292 opt: 338  Z-score: 474.4  bits: 92.6 E(85289): 1.1e-19
Smith-Waterman score: 338; 55.3% identity (81.2% similar) in 85 aa overlap (13-97:13-97)

               10        20        30        40        50        60
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
                   :. :.::::::::..::: ::. :::::  :.. :::..::::.::.:
NP_004 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       :::::::..:.::.:  .. .. .   :.: : : .:
NP_004 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       

>>XP_011523337 (OMIM: 600781) PREDICTED: peptide YY isof  (97 aa)
 initn: 307 init1: 281 opt: 327  Z-score: 459.3  bits: 89.8 E(85289): 7.6e-19
Smith-Waterman score: 327; 54.1% identity (80.0% similar) in 85 aa overlap (13-97:13-97)

               10        20        30        40        50        60
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
                   :. :.::::::::..::: ::. : :::  :.. :::..::::.::.:
XP_011 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       :::::::..:.::.:  .. .. .   :.: : : .:
XP_011 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       

>>NP_001306138 (OMIM: 167780) pancreatic prohormone isof  (101 aa)
 initn: 182 init1: 160 opt: 178  Z-score: 254.5  bits: 51.9 E(85289): 1.9e-07
Smith-Waterman score: 178; 42.7% identity (68.0% similar) in 75 aa overlap (1-73:6-80)

                    10        20          30        40        50   
pF1KE1      MLGNKRLGLSGLTLALSLLVCLGAL--AEAYPSKPDNPGEDAPAEDMARYYSALR
            ...  :: :: : :.  . . :  :  :.. : .:  ::..:  :.::.: . ::
NP_001 MCDCDLMAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLR
               10        20        30        40        50        60

            60        70        80        90       
pF1KE1 HYINLITRQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       .:::..:: ::::: . .::                        
NP_001 RYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
               70        80        90       100    

>>NP_002713 (OMIM: 167780) pancreatic prohormone isoform  (95 aa)
 initn: 182 init1: 160 opt: 175  Z-score: 250.8  bits: 51.2 E(85289): 3.1e-07
Smith-Waterman score: 175; 43.2% identity (67.6% similar) in 74 aa overlap (2-73:1-74)

               10        20          30        40        50        
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGAL--AEAYPSKPDNPGEDAPAEDMARYYSALRHYINL
        ..  :: :: : :.  . . :  :  :.. : .:  ::..:  :.::.: . ::.:::.
NP_002  MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINM
                10        20        30        40        50         

       60        70        80        90       
pF1KE1 ITRQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       .:: ::::: . .::                        
NP_002 LTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
      60        70        80        90        

>>XP_011523280 (OMIM: 167780) PREDICTED: pancreatic proh  (104 aa)
 initn: 182 init1: 160 opt: 175  Z-score: 250.2  bits: 51.2 E(85289): 3.4e-07
Smith-Waterman score: 175; 43.2% identity (67.6% similar) in 74 aa overlap (2-73:10-83)

                       10        20          30        40        50
pF1KE1         MLGNKRLGLSGLTLALSLLVCLGAL--AEAYPSKPDNPGEDAPAEDMARYYS
                ..  :: :: : :.  . . :  :  :.. : .:  ::..:  :.::.: .
XP_011 MTFVFALWNMAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAA
               10        20        30        40        50        60

               60        70        80        90       
pF1KE1 ALRHYINLITRQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
        ::.:::..:: ::::: . .::                        
XP_011 DLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL   
               70        80        90       100       




97 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:17:45 2016 done: Mon Nov  7 00:17:46 2016
 Total Scan time:  4.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]