FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1477, 351 aa
  1>>>pF1KE1477 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4457+/-0.000973; mu= -2.7277+/- 0.059
 mean_var=375.9691+/-74.903, 0's: 0 Z-trim(116.8): 6  B-trim: 81 in 1/54
 Lambda= 0.066145
 statistics sampled from 17443 (17448) to 17443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.536), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS889.1 CD2 gene_id:914|Hs108|chr1               ( 351) 2380 240.2   2e-63


>>CCDS889.1 CD2 gene_id:914|Hs108|chr1                    (351 aa)
 initn: 2380 init1: 2380 opt: 2380  Z-score: 1252.1  bits: 240.2 E(32554): 2e-63
Smith-Waterman score: 2380; 99.7% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RSRRNDEELETRAHRVATEERGRKPQQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
CCDS88 RSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KE1 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN
              310       320       330       340       350 




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:00:38 2016 done: Mon Nov  7 00:00:38 2016
 Total Scan time:  3.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]