Result of FASTA (omim) for
pFN21AE1475
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1475, 164 aa
1>>>pF1KE1475 164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0749+/-0.000321; mu= 14.1313+/- 0.020
mean_var=73.5595+/-14.839, 0's: 0 Z-trim(116.6): 8 B-trim: 1376 in 1/54
Lambda= 0.149539
statistics sampled from 27881 (27889) to 27881 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.327), width: 16
Scan time: 4.110
The best scores are: opt bits E(85289)
NP_932170 (OMIM: 186780,610163) T-cell surface gly ( 164) 1097 245.2 3.5e-65
NP_000725 (OMIM: 186780,610163) T-cell surface gly ( 163) 1078 241.1 6e-64
XP_011508446 (OMIM: 186780,610163) PREDICTED: T-ce ( 172) 977 219.3 2.3e-57
XP_016858289 (OMIM: 186780,610163) PREDICTED: T-ce ( 195) 976 219.2 2.9e-57
XP_011508447 (OMIM: 186780,610163) PREDICTED: T-ce ( 171) 958 215.2 3.9e-56
XP_016858290 (OMIM: 186780,610163) PREDICTED: T-ce ( 194) 957 215.0 5e-56
NP_004097 (OMIM: 147139) high affinity immunoglobu ( 86) 171 45.2 3e-05
>>NP_932170 (OMIM: 186780,610163) T-cell surface glycopr (164 aa)
initn: 1097 init1: 1097 opt: 1097 Z-score: 1291.1 bits: 245.2 E(85289): 3.5e-65
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
70 80 90 100 110 120
130 140 150 160
pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
::::::::::::::::::::::::::::::::::::::::::::
NP_932 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
130 140 150 160
>>NP_000725 (OMIM: 186780,610163) T-cell surface glycopr (163 aa)
initn: 697 init1: 675 opt: 1078 Z-score: 1269.0 bits: 241.1 E(85289): 6e-64
Smith-Waterman score: 1078; 99.4% identity (99.4% similar) in 164 aa overlap (1-164:1-163)
10 20 30 40 50 60
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_000 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNELQKDKMA
70 80 90 100 110
130 140 150 160
pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
::::::::::::::::::::::::::::::::::::::::::::
NP_000 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160
>>XP_011508446 (OMIM: 186780,610163) PREDICTED: T-cell s (172 aa)
initn: 976 init1: 976 opt: 977 Z-score: 1150.9 bits: 219.3 E(85289): 2.3e-57
Smith-Waterman score: 977; 97.3% identity (98.0% similar) in 150 aa overlap (15-164:23-172)
10 20 30 40 50
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
: . :::::::::::::::::::::::::::::::::
XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN
70 80 90 100 110 120
120 130 140 150 160
pF1KE1 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
130 140 150 160 170
>>XP_016858289 (OMIM: 186780,610163) PREDICTED: T-cell s (195 aa)
initn: 1083 init1: 976 opt: 976 Z-score: 1149.0 bits: 219.2 E(85289): 2.9e-57
Smith-Waterman score: 1025; 84.1% identity (84.1% similar) in 195 aa overlap (1-164:1-195)
10 20
pF1KE1 MKWKALFTAAILQAQLPIT-------------------------------EAQSFGLLDP
::::::::::::::::::: ::::::::::
XP_016 MKWKALFTAAILQAQLPITASSLPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDP
10 20 30 40 50 60
30 40 50 60 70 80
pF1KE1 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE1 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT
130 140 150 160 170 180
150 160
pF1KE1 KDTYDALHMQALPPR
:::::::::::::::
XP_016 KDTYDALHMQALPPR
190
>>XP_011508447 (OMIM: 186780,610163) PREDICTED: T-cell s (171 aa)
initn: 576 init1: 554 opt: 958 Z-score: 1128.8 bits: 215.2 E(85289): 3.9e-56
Smith-Waterman score: 958; 96.7% identity (97.3% similar) in 150 aa overlap (15-164:23-171)
10 20 30 40 50
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
: . :::::::::::::::::::::::::::::::::
XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYN
70 80 90 100 110
120 130 140 150 160
pF1KE1 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
120 130 140 150 160 170
>>XP_016858290 (OMIM: 186780,610163) PREDICTED: T-cell s (194 aa)
initn: 683 init1: 554 opt: 957 Z-score: 1126.9 bits: 215.0 E(85289): 5e-56
Smith-Waterman score: 1006; 83.6% identity (83.6% similar) in 195 aa overlap (1-164:1-194)
10 20
pF1KE1 MKWKALFTAAILQAQLPIT-------------------------------EAQSFGLLDP
::::::::::::::::::: ::::::::::
XP_016 MKWKALFTAAILQAQLPITASSLPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDP
10 20 30 40 50 60
30 40 50 60 70 80
pF1KE1 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE1 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGRDPEMGGKP-RRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT
130 140 150 160 170
150 160
pF1KE1 KDTYDALHMQALPPR
:::::::::::::::
XP_016 KDTYDALHMQALPPR
180 190
>>NP_004097 (OMIM: 147139) high affinity immunoglobulin (86 aa)
initn: 170 init1: 114 opt: 171 Z-score: 215.3 bits: 45.2 E(85289): 3e-05
Smith-Waterman score: 171; 33.7% identity (73.3% similar) in 86 aa overlap (6-90:1-83)
10 20 30 40 50
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFS-RSA
.. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.:.. :.:
NP_004 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKIQVRKA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKM
.:... . .:. :. .: :..: ...
NP_004 AITSYEKS-DGVYTGLSTRNQETYETLKHEKPPQ
60 70 80
120 130 140 150 160
pF1KE1 AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
164 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:38:30 2016 done: Sun Nov 6 22:38:30 2016
Total Scan time: 4.110 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]