Result of FASTA (omim) for
pFN21AE1469
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1469, 93 aa
1>>>pF1KE1469 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5527+/-0.000279; mu= 12.0984+/- 0.017
mean_var=47.5433+/- 9.351, 0's: 0 Z-trim(119.1): 58 B-trim: 0 in 0/50
Lambda= 0.186007
statistics sampled from 32638 (32699) to 32638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.383), width: 16
Scan time: 3.960
The best scores are: opt bits E(85289)
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 626 174.5 2.2e-44
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 626 174.5 2.2e-44
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 206 61.8 1.8e-10
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 201 60.4 4.6e-10
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 193 58.3 2.1e-09
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 191 57.8 3e-09
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 190 57.5 3.6e-09
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 190 57.5 3.6e-09
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 189 57.2 4.3e-09
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 186 56.4 7.6e-09
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 186 56.4 8e-09
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 179 54.6 3e-08
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 177 54.0 4.1e-08
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 177 54.1 5.1e-08
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 177 54.1 5.2e-08
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 171 52.4 1.3e-07
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 170 52.1 1.6e-07
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 169 51.9 2.1e-07
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 168 51.6 2.3e-07
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 168 51.6 2.6e-07
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 166 51.0 3e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 163 50.3 5.7e-07
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 159 49.2 1.4e-06
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 159 49.2 1.4e-06
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 159 49.2 1.4e-06
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 150 46.8 6.2e-06
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 150 46.8 6.2e-06
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 151 47.1 6.4e-06
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 151 47.1 6.4e-06
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 150 46.8 8.4e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 150 46.9 9e-06
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 150 46.9 9.2e-06
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 143 44.9 2.3e-05
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 142 44.7 3.8e-05
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 136 43.0 9.1e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 134 42.5 0.00014
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 134 42.5 0.00014
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 133 42.2 0.00015
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 134 42.5 0.00015
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 126 40.4 0.00064
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 122 39.2 0.00082
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 122 39.2 0.00082
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 124 39.8 0.00092
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 123 39.5 0.001
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 122 39.2 0.0011
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 123 39.6 0.0014
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 121 39.0 0.0016
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 125 40.4 0.0022
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 116 37.6 0.0033
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 116 37.6 0.0034
>>XP_016879020 (OMIM: 602957) PREDICTED: C-C motif chemo (93 aa)
initn: 626 init1: 626 opt: 626 Z-score: 917.9 bits: 174.5 E(85289): 2.2e-44
Smith-Waterman score: 626; 98.9% identity (98.9% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDRLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
10 20 30 40 50 60
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
:::::::::::::::::::::::::::::::::
XP_016 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
70 80 90
>>NP_002981 (OMIM: 602957) C-C motif chemokine 22 precur (93 aa)
initn: 626 init1: 626 opt: 626 Z-score: 917.9 bits: 174.5 E(85289): 2.2e-44
Smith-Waterman score: 626; 98.9% identity (98.9% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDRLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
10 20 30 40 50 60
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
:::::::::::::::::::::::::::::::::
NP_002 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
70 80 90
>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa)
initn: 221 init1: 187 opt: 206 Z-score: 309.1 bits: 61.8 E(85289): 1.8e-10
Smith-Waterman score: 206; 37.4% identity (61.5% similar) in 91 aa overlap (1-91:1-85)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
: : .::::.. .:. : :.: : .:: :. ...: . . . :: .:
NP_002 MKGLAAALLVLVCTMALCSCAQ----VGTNKE--LCCLVYTSWQIPQKFIVDYSETSPQC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
:.:::.::: : ..::::: ::. .. :
NP_002 PKPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 190 init1: 171 opt: 201 Z-score: 301.7 bits: 60.4 E(85289): 4.6e-10
Smith-Waterman score: 201; 34.1% identity (68.2% similar) in 85 aa overlap (7-91:7-88)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
:: :.:. :. :. :.::... . :: :. :: .:....:: .:
NP_002 MKVSAAALAVILIATALCAPAS-ASPYSSD--TTPCCFAYIARPLPRAHIKEYFYTSGKC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
:.::..: .....::.:. ::. .:.:
NP_002 SNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 193 init1: 162 opt: 193 Z-score: 290.0 bits: 58.3 E(85289): 2.1e-09
Smith-Waterman score: 193; 36.1% identity (68.7% similar) in 83 aa overlap (3-85:2-83)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
.: ...: .:::.:. . . ..:.:.. ..:: .:. .:: : .: ::. :
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSD-PPTACCFSYTARKLPRNFVVDYYETSSLC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
.:.::. : : :..:::: ::.
NP_996 SQPAVVFQTKRGKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 180 init1: 163 opt: 191 Z-score: 287.1 bits: 57.8 E(85289): 3e-09
Smith-Waterman score: 191; 34.9% identity (69.9% similar) in 83 aa overlap (3-85:2-83)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
.: ...: .:.:.:. . . ..:.:.. ..:: .:. .:: : .: ::. :
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSD-PPTACCFSYTARKLPRNFVVDYYETSSLC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
.:.::. : :.:..:::: ::.
NP_002 SQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 179 init1: 169 opt: 190 Z-score: 285.6 bits: 57.5 E(85289): 3.6e-09
Smith-Waterman score: 190; 32.9% identity (64.7% similar) in 85 aa overlap (7-91:7-89)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
:: :.: .:. :. : : .:. ..:: .:. ..: . .. ::..:
NP_066 MQVSTAALAVLLCTMALCNQVLSA-PLAADTP-TACCFSYTSRQIPQNFIADYFETSSQC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
.:.:..:: : ...:::: ::. .. :
NP_066 SKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 179 init1: 169 opt: 190 Z-score: 285.6 bits: 57.5 E(85289): 3.6e-09
Smith-Waterman score: 190; 32.9% identity (64.7% similar) in 85 aa overlap (7-91:7-89)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
:: :.: .:. :. : : .:. ..:: .:. ..: . .. ::..:
NP_001 MQVSTAALAVLLCTMALCNQVLSA-PLAADTP-TACCFSYTSRQIPQNFIADYFETSSQC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
.:.:..:: : ...:::: ::. .. :
NP_001 SKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 188 init1: 178 opt: 189 Z-score: 284.2 bits: 57.2 E(85289): 4.3e-09
Smith-Waterman score: 189; 32.6% identity (67.4% similar) in 89 aa overlap (3-91:2-88)
10 20 30 40 50 60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
...:: :.:: : ..:: .. .:. ..:: .:. ..: . .. ::..:
NP_002 MQVSTAALAVL-LCTMALCNQFSASLAADTP-TACCFSYTSRQIPQNFIADYFETSSQC
10 20 30 40 50
70 80 90
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
.:::..:: :....:::: ::. .. :
NP_002 SKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 199 init1: 161 opt: 186 Z-score: 279.8 bits: 56.4 E(85289): 7.6e-09
Smith-Waterman score: 186; 26.7% identity (65.1% similar) in 86 aa overlap (8-93:11-92)
10 20 30 40 50
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTS
.:.. . :.. ... ::: . : :: :. :..: . . .: :.
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPY----HPSECCFTYTTYKIPRQRIMDYYETN
10 20 30 40 50
60 70 80 90
pF1KE1 DSCPRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
..: .::.:..: : . .:..: ::. .. ...
NP_116 SQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
93 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:24:44 2016 done: Mon Nov 7 00:24:45 2016
Total Scan time: 3.960 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]