FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1469, 93 aa
  1>>>pF1KE1469 93 - 93 aa - 93 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2550+/-0.000527; mu= 13.8297+/- 0.032
 mean_var=45.9654+/- 9.094, 0's: 0 Z-trim(112.9): 44  B-trim: 216 in 1/48
 Lambda= 0.189173
 statistics sampled from 13569 (13614) to 13569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.418), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS10778.1 CCL22 gene_id:6367|Hs108|chr16         (  93)  626 177.0 1.5e-45
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17         (  89)  206 62.3 4.6e-11


>>CCDS10778.1 CCL22 gene_id:6367|Hs108|chr16              (93 aa)
 initn: 626 init1: 626 opt: 626  Z-score: 931.3  bits: 177.0 E(32554): 1.5e-45
Smith-Waterman score: 626; 98.9% identity (98.9% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
       : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDRLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
               10        20        30        40        50        60

               70        80        90   
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
       :::::::::::::::::::::::::::::::::
CCDS10 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ
               70        80        90   

>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17              (89 aa)
 initn: 221 init1: 187 opt: 206  Z-score: 312.1  bits: 62.3 E(32554): 4.6e-11
Smith-Waterman score: 206; 37.4% identity (61.5% similar) in 91 aa overlap (1-91:1-85)

               10        20        30        40        50        60
pF1KE1 MARLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC
       :  : .::::..  .:.   :      :.: :  .::  :. ...: . .  .  :: .:
CCDS11 MKGLAAALLVLVCTMALCSCAQ----VGTNKE--LCCLVYTSWQIPQKFIVDYSETSPQC
               10        20              30        40        50    

               70        80        90     
pF1KE1 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ  
       :.:::.::: : ..:::::   ::.  .. :    
CCDS11 PKPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
           60        70        80         




93 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:24:43 2016 done: Mon Nov  7 00:24:43 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]