FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1464, 186 aa
  1>>>pF1KE1464 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6865+/-0.000826; mu= 11.9472+/- 0.049
 mean_var=77.3747+/-15.445, 0's: 0 Z-trim(108.3): 20  B-trim: 302 in 1/50
 Lambda= 0.145806
 statistics sampled from 10113 (10121) to 10113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.311), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS33813.1 TRAT1 gene_id:50852|Hs108|chr3         ( 186) 1242 270.1 5.6e-73
CCDS82814.1 TRAT1 gene_id:50852|Hs108|chr3         ( 149)  983 215.6 1.2e-56


>>CCDS33813.1 TRAT1 gene_id:50852|Hs108|chr3              (186 aa)
 initn: 1242 init1: 1242 opt: 1242  Z-score: 1423.7  bits: 270.1 E(32554): 5.6e-73
Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA
              130       140       150       160       170       180

             
pF1KE1 KREPIN
       ::::::
CCDS33 KREPIN
             

>>CCDS82814.1 TRAT1 gene_id:50852|Hs108|chr3              (149 aa)
 initn: 983 init1: 983 opt: 983  Z-score: 1130.7  bits: 215.6 E(32554): 1.2e-56
Smith-Waterman score: 983; 100.0% identity (100.0% similar) in 147 aa overlap (40-186:3-149)

      10        20        30        40        50        60         
pF1KE1 FLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM
                                     ::::::::::::::::::::::::::::::
CCDS82                             MSDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM
                                           10        20        30  

      70        80        90       100       110       120         
pF1KE1 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT
             40        50        60        70        80        90  

     130       140       150       160       170       180      
pF1KE1 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN
            100       110       120       130       140         




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:32:58 2016 done: Mon Nov  7 00:32:58 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]