FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1462, 236 aa
  1>>>pF1KE1462 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6265+/-0.000933; mu= 8.4823+/- 0.056
 mean_var=100.4844+/-19.424, 0's: 0 Z-trim(107.9): 28  B-trim: 6 in 1/51
 Lambda= 0.127945
 statistics sampled from 9870 (9889) to 9870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.304), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS32565.1 STX8 gene_id:9482|Hs108|chr17          ( 236) 1509 288.6 2.4e-78


>>CCDS32565.1 STX8 gene_id:9482|Hs108|chr17               (236 aa)
 initn: 1509 init1: 1509 opt: 1509  Z-score: 1520.1  bits: 288.6 E(32554): 2.4e-78
Smith-Waterman score: 1509; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KE1 MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPKLTVTIRALLQNLKEKIALLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPKLTVTIRALLQNLKEKIALLKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LLLRAVSTHQITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLLRAVSTHQITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQN
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KE1 EIIDDLANLVENTDEKLRNETRRVNMVDRKSASCGMIMVILLLLVAIVVVAVWPTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EIIDDLANLVENTDEKLRNETRRVNMVDRKSASCGMIMVILLLLVAIVVVAVWPTN
              190       200       210       220       230      




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:02:01 2016 done: Mon Nov  7 02:02:01 2016
 Total Scan time:  2.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]