FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1449, 400 aa
  1>>>pF1KE1449 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1911+/-0.0011; mu= -10.6531+/- 0.066
 mean_var=506.5136+/-107.339, 0's: 0 Z-trim(116.1): 19  B-trim: 434 in 1/54
 Lambda= 0.056987
 statistics sampled from 16715 (16730) to 16715 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.514), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS2939.1 TFG gene_id:10342|Hs108|chr3            ( 400) 2727 238.2 1.1e-62
CCDS56266.1 TFG gene_id:10342|Hs108|chr3           ( 396) 2683 234.5 1.3e-61


>>CCDS2939.1 TFG gene_id:10342|Hs108|chr3                 (400 aa)
 initn: 2727 init1: 2727 opt: 2727  Z-score: 1239.2  bits: 238.2 E(32554): 1.1e-62
Smith-Waterman score: 2727; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KE1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR
              310       320       330       340       350       360

              370       380       390       400
pF1KE1 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR
       ::::::::::::::::::::::::::::::::::::::::
CCDS29 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR
              370       380       390       400

>>CCDS56266.1 TFG gene_id:10342|Hs108|chr3                (396 aa)
 initn: 1620 init1: 1620 opt: 2683  Z-score: 1219.7  bits: 234.5 E(32554): 1.3e-61
Smith-Waterman score: 2683; 99.0% identity (99.0% similar) in 400 aa overlap (1-400:1-396)

               10        20        30        40        50        60
pF1KE1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS56 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQ--
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KE1 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 --MYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KE1 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR
        300       310       320       330       340       350      

              370       380       390       400
pF1KE1 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR
       ::::::::::::::::::::::::::::::::::::::::
CCDS56 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR
        360       370       380       390      




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:50:14 2016 done: Mon Nov  7 02:50:15 2016
 Total Scan time:  3.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]