FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1446, 325 aa
  1>>>pF1KE1446 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0550+/-0.00121; mu= 6.1936+/- 0.072
 mean_var=112.8607+/-24.207, 0's: 0 Z-trim(104.3): 129  B-trim: 43 in 1/48
 Lambda= 0.120727
 statistics sampled from 7672 (7815) to 7672 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.24), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS357.1 EIF3I gene_id:8668|Hs108|chr1            ( 325) 2225 398.9 2.8e-111


>>CCDS357.1 EIF3I gene_id:8668|Hs108|chr1                 (325 aa)
 initn: 2225 init1: 2225 opt: 2225  Z-score: 2111.3  bits: 398.9 E(32554): 2.8e-111
Smith-Waterman score: 2225; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY
              250       260       270       280       290       300

              310       320     
pF1KE1 SSGGEDGYVRIHYFDPQYFEFEFEA
       :::::::::::::::::::::::::
CCDS35 SSGGEDGYVRIHYFDPQYFEFEFEA
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:36:44 2016 done: Sun Nov  6 23:36:45 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]