Result of FASTA (omim) for
pFN21AE1445
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1445, 293 aa
1>>>pF1KE1445 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0299+/-0.000414; mu= 16.6519+/- 0.026
mean_var=60.8479+/-12.374, 0's: 0 Z-trim(110.5): 86 B-trim: 130 in 1/48
Lambda= 0.164419
statistics sampled from 18830 (18918) to 18830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.222), width: 16
Scan time: 7.070
The best scores are: opt bits E(85289)
NP_001217 (OMIM: 601532) caspase-6 isoform alpha p ( 293) 2000 483.1 2.8e-136
NP_116787 (OMIM: 601532) caspase-6 isoform beta [H ( 204) 1295 315.8 4.5e-86
XP_005246951 (OMIM: 114480,114550,211980,601763,60 ( 280) 451 115.6 1.1e-25
XP_011510271 (OMIM: 114480,114550,211980,601763,60 ( 334) 451 115.7 1.3e-25
NP_203520 (OMIM: 114480,114550,211980,601763,60727 ( 464) 451 115.8 1.6e-25
XP_005246949 (OMIM: 114480,114550,211980,601763,60 ( 464) 451 115.8 1.6e-25
NP_001073593 (OMIM: 114480,114550,211980,601763,60 ( 464) 451 115.8 1.6e-25
NP_203519 (OMIM: 114480,114550,211980,601763,60727 ( 479) 451 115.8 1.7e-25
XP_005246943 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_006712852 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_005246947 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_005246945 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_005246944 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_006712853 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_005246948 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
XP_005246946 (OMIM: 114480,114550,211980,601763,60 ( 479) 451 115.8 1.7e-25
NP_001219 (OMIM: 114480,114550,211980,601763,60727 ( 496) 451 115.8 1.7e-25
XP_005246942 (OMIM: 114480,114550,211980,601763,60 ( 523) 451 115.8 1.8e-25
NP_001073594 (OMIM: 114480,114550,211980,601763,60 ( 538) 451 115.8 1.9e-25
XP_006712859 (OMIM: 601762,603909,605027,613659) P ( 272) 408 105.4 1.2e-22
NP_001221 (OMIM: 601762,603909,605027,613659) casp ( 479) 408 105.6 2e-22
XP_005246964 (OMIM: 601762,603909,605027,613659) P ( 521) 408 105.6 2.1e-22
NP_116759 (OMIM: 601762,603909,605027,613659) casp ( 522) 408 105.6 2.1e-22
NP_116764 (OMIM: 600639) caspase-2 isoform 1 prepr ( 452) 391 101.5 3.1e-21
NP_116786 (OMIM: 600636) caspase-3 preproprotein [ ( 277) 386 100.2 4.7e-21
NP_004337 (OMIM: 600636) caspase-3 preproprotein [ ( 277) 386 100.2 4.7e-21
XP_011530603 (OMIM: 600636) PREDICTED: caspase-3 i ( 277) 386 100.2 4.7e-21
NP_001193453 (OMIM: 601762,603909,605027,613659) c ( 455) 378 98.4 2.6e-20
NP_001193471 (OMIM: 601762,603909,605027,613659) c ( 478) 366 95.6 2e-19
NP_116756 (OMIM: 601762,603909,605027,613659) casp ( 521) 366 95.6 2.1e-19
NP_001253987 (OMIM: 601761) caspase-7 isoform f [H ( 278) 352 92.2 1.3e-18
XP_011538562 (OMIM: 601761) PREDICTED: caspase-7 i ( 270) 351 91.9 1.5e-18
NP_001253985 (OMIM: 601761) caspase-7 isoform alph ( 303) 351 91.9 1.6e-18
NP_001218 (OMIM: 601761) caspase-7 isoform alpha p ( 303) 351 91.9 1.6e-18
NP_203125 (OMIM: 601761) caspase-7 isoform alpha p ( 303) 351 91.9 1.6e-18
XP_016872253 (OMIM: 601761) PREDICTED: caspase-7 i ( 311) 351 91.9 1.6e-18
NP_001307840 (OMIM: 601761) caspase-7 isoform g [H ( 311) 351 91.9 1.6e-18
XP_006718080 (OMIM: 601761) PREDICTED: caspase-7 i ( 317) 351 91.9 1.7e-18
XP_016872252 (OMIM: 601761) PREDICTED: caspase-7 i ( 322) 351 92.0 1.7e-18
NP_203124 (OMIM: 601761) caspase-7 isoform delta [ ( 336) 351 92.0 1.7e-18
NP_001253986 (OMIM: 601761) caspase-7 isoform e [H ( 388) 351 92.0 2e-18
XP_005246071 (OMIM: 602234) PREDICTED: caspase-9 i ( 333) 286 76.5 7.6e-14
NP_127463 (OMIM: 602234) caspase-9 isoform 3 [Homo ( 333) 286 76.5 7.6e-14
NP_001220 (OMIM: 602234) caspase-9 isoform alpha p ( 416) 286 76.6 9.1e-14
XP_011540575 (OMIM: 602234) PREDICTED: caspase-9 i ( 421) 286 76.6 9.2e-14
NP_001215 (OMIM: 600639) caspase-2 isoform 2 [Homo ( 312) 269 72.5 1.2e-12
NP_150635 (OMIM: 147678) caspase-1 isoform gamma [ ( 311) 235 64.4 3.1e-10
NP_001129582 (OMIM: 602665) caspase-5 isoform c [H ( 292) 234 64.2 3.5e-10
XP_016873885 (OMIM: 147678) PREDICTED: caspase-1 i ( 374) 235 64.5 3.7e-10
XP_016873884 (OMIM: 147678) PREDICTED: caspase-1 i ( 380) 235 64.5 3.7e-10
>>NP_001217 (OMIM: 601532) caspase-6 isoform alpha precu (293 aa)
initn: 2000 init1: 2000 opt: 2000 Z-score: 2567.7 bits: 483.1 E(85289): 2.8e-136
Smith-Waterman score: 2000; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE1 MSSASGLRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSASGLRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYG
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 SSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
250 260 270 280 290
>>NP_116787 (OMIM: 601532) caspase-6 isoform beta [Homo (204 aa)
initn: 1295 init1: 1295 opt: 1295 Z-score: 1666.3 bits: 315.8 E(85289): 4.5e-86
Smith-Waterman score: 1295; 100.0% identity (100.0% similar) in 191 aa overlap (103-293:14-204)
80 90 100 110 120 130
pF1KE1 NLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDA
::::::::::::::::::::::::::::::
NP_116 MSSASGLRRGHPAVSTVSHADADCFVCVFLSHGEGNHIYAYDA
10 20 30 40
140 150 160 170 180 190
pF1KE1 KIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEV
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE1 DAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLV
110 120 130 140 150 160
260 270 280 290
pF1KE1 NRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
:::::::::::::::::::::::::::::::::::::::::
NP_116 NRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
170 180 190 200
>>XP_005246951 (OMIM: 114480,114550,211980,601763,607271 (280 aa)
initn: 461 init1: 169 opt: 451 Z-score: 582.2 bits: 115.6 E(85289): 1.1e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:27-278)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
XP_005 MKNSAKREAAALKEVLMNFQMTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
XP_005 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
XP_005 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
XP_005 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
180 190 200 210 220
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
XP_005 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
230 240 250 260 270
pF1KE1 KSN
XP_005 SD
280
>>XP_011510271 (OMIM: 114480,114550,211980,601763,607271 (334 aa)
initn: 443 init1: 169 opt: 451 Z-score: 581.1 bits: 115.7 E(85289): 1.3e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:81-332)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
XP_011 FSNGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
XP_011 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
120 130 140 150 160
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
XP_011 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
170 180 190 200 210 220
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
XP_011 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
230 240 250 260 270
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
XP_011 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
280 290 300 310 320 330
pF1KE1 KSN
XP_011 SD
>>NP_203520 (OMIM: 114480,114550,211980,601763,607271) c (464 aa)
initn: 443 init1: 169 opt: 451 Z-score: 579.0 bits: 115.8 E(85289): 1.6e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:211-462)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
NP_203 FSKGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
190 200 210 220 230 240
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
NP_203 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
250 260 270 280 290
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
NP_203 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
300 310 320 330 340 350
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
NP_203 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
360 370 380 390 400
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
NP_203 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
410 420 430 440 450 460
pF1KE1 KSN
NP_203 SD
>>XP_005246949 (OMIM: 114480,114550,211980,601763,607271 (464 aa)
initn: 443 init1: 169 opt: 451 Z-score: 579.0 bits: 115.8 E(85289): 1.6e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:211-462)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
XP_005 FSKGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
190 200 210 220 230 240
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
XP_005 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
250 260 270 280 290
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
XP_005 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
300 310 320 330 340 350
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
XP_005 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
360 370 380 390 400
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
XP_005 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
410 420 430 440 450 460
pF1KE1 KSN
XP_005 SD
>>NP_001073593 (OMIM: 114480,114550,211980,601763,607271 (464 aa)
initn: 443 init1: 169 opt: 451 Z-score: 579.0 bits: 115.8 E(85289): 1.6e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:211-462)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
NP_001 FSKGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
190 200 210 220 230 240
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
NP_001 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
250 260 270 280 290
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
NP_001 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
300 310 320 330 340 350
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
NP_001 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
360 370 380 390 400
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
NP_001 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
410 420 430 440 450 460
pF1KE1 KSN
NP_001 SD
>>NP_203519 (OMIM: 114480,114550,211980,601763,607271) c (479 aa)
initn: 443 init1: 169 opt: 451 Z-score: 578.8 bits: 115.8 E(85289): 1.7e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:226-477)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
NP_203 FSNGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
NP_203 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
NP_203 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
320 330 340 350 360 370
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
NP_203 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
380 390 400 410 420
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
NP_203 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
430 440 450 460 470
pF1KE1 KSN
NP_203 SD
>>XP_005246943 (OMIM: 114480,114550,211980,601763,607271 (479 aa)
initn: 443 init1: 169 opt: 451 Z-score: 578.8 bits: 115.8 E(85289): 1.7e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:226-477)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
XP_005 FSNGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
XP_005 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
XP_005 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
320 330 340 350 360 370
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
XP_005 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
380 390 400 410 420
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
XP_005 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
430 440 450 460 470
pF1KE1 KSN
XP_005 SD
>>XP_006712852 (OMIM: 114480,114550,211980,601763,607271 (479 aa)
initn: 443 init1: 169 opt: 451 Z-score: 578.8 bits: 115.8 E(85289): 1.7e-25
Smith-Waterman score: 452; 35.6% identity (61.5% similar) in 270 aa overlap (37-290:226-477)
10 20 30 40 50
pF1KE1 LRRGHPAGGEENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFF--------WH
:.: . :: ::.:.. : :
XP_006 FSNGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLH
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE1 LTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL--LLKIHEVSTVSHADADCFVC
.. .: :: : :: : .: ::.: .: .:.. .:::... ..:.. :::.:
XP_006 -SIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL--MDHSNMDCFIC
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE1 VFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGN--QHDVPVI
.::::. . ::. :.. : ::. : : :: ::.::::.:.::::.:. :. .::
XP_006 CILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV-
320 330 340 350 360 370
180 190 200 210 220 230
pF1KE1 PLDVVDNQTEKLDTNITEVDAASVYT--LPAGADFLMCYSVAEGYYSHRETVNGSWYIQD
.:.. . :.: .: : .: ::::. ...... :.:. ..:.::::.
XP_006 -------ETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQS
380 390 400 410 420
240 250 260 270 280 290
pF1KE1 LCEMLGKY-GSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFP
::. : . . .. .:: :: .::.. : . .:: :.: . : ::: ::
XP_006 LCQSLRERCPRGDDILTILTEVNYEVSNK-----DDKKNMGK-QMPQPTFTLRKKL-VFP
430 440 450 460 470
pF1KE1 KSN
XP_006 SD
293 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:37:15 2016 done: Sun Nov 6 23:37:16 2016
Total Scan time: 7.070 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]