FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1442, 255 aa
  1>>>pF1KE1442 255 - 255 aa - 255 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9318+/-0.000729; mu= 9.2319+/- 0.044
 mean_var=149.4281+/-29.129, 0's: 0 Z-trim(115.8): 47  B-trim: 38 in 1/50
 Lambda= 0.104920
 statistics sampled from 16281 (16328) to 16281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.502), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS92.1 TNFRSF9 gene_id:3604|Hs108|chr1           ( 255) 1848 290.3 8.5e-79


>>CCDS92.1 TNFRSF9 gene_id:3604|Hs108|chr1                (255 aa)
 initn: 1848 init1: 1848 opt: 1848  Z-score: 1528.2  bits: 290.3 E(32554): 8.5e-79
Smith-Waterman score: 1848; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KE1 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG
              190       200       210       220       230       240

              250     
pF1KE1 CSCRFPEEEEGGCEL
       :::::::::::::::
CCDS92 CSCRFPEEEEGGCEL
              250     




255 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:17:24 2016 done: Mon Nov  7 02:17:25 2016
 Total Scan time:  2.030 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]