FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1439, 129 aa
  1>>>pF1KE1439 129 - 129 aa - 129 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9372+/-0.000529; mu= 14.0929+/- 0.032
 mean_var=75.7846+/-14.811, 0's: 0 Z-trim(115.7): 6  B-trim: 55 in 2/49
 Lambda= 0.147327
 statistics sampled from 16245 (16250) to 16245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.499), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS10489.1 TNFRSF12A gene_id:51330|Hs108|chr16    ( 129)  908 200.8   2e-52


>>CCDS10489.1 TNFRSF12A gene_id:51330|Hs108|chr16         (129 aa)
 initn: 908 init1: 908 opt: 908  Z-score: 1054.7  bits: 200.8 E(32554): 2e-52
Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KE1 MARGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MARGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SDFCLGCAAAPPAPFRLLWPILGGALSLTFVLGLLSGFLVWRRCRRREKFTTPIEETGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SDFCLGCAAAPPAPFRLLWPILGGALSLTFVLGLLSGFLVWRRCRRREKFTTPIEETGGE
               70        80        90       100       110       120

                
pF1KE1 GCPAVALIQ
       :::::::::
CCDS10 GCPAVALIQ
                




129 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:35:49 2016 done: Mon Nov  7 02:35:50 2016
 Total Scan time:  1.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]