Result of FASTA (omim) for
pFN21AE1432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1432, 200 aa
1>>>pF1KE1432 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4642+/-0.000333; mu= 7.3803+/- 0.021
mean_var=82.8048+/-15.874, 0's: 0 Z-trim(115.9): 21 B-trim: 126 in 1/58
Lambda= 0.140944
statistics sampled from 26730 (26751) to 26730 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.314), width: 16
Scan time: 6.420
The best scores are: opt bits E(85289)
XP_006711966 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
XP_016860757 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
XP_005246241 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
XP_005246242 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
XP_016860756 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
XP_011508718 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
NP_004754 (OMIM: 607153) integrin beta-1-binding p ( 200) 1272 268.0 7.3e-72
NP_001305995 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72
XP_005246240 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72
NP_001305997 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72
NP_001305996 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72
NP_001305998 (OMIM: 607153) integrin beta-1-bindin ( 156) 979 208.4 5e-54
XP_016860759 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43
XP_005246246 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43
NP_071729 (OMIM: 607153) integrin beta-1-binding p ( 150) 802 172.4 3.3e-43
XP_016860758 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43
NP_001305999 (OMIM: 607153) integrin beta-1-bindin ( 128) 684 148.4 4.8e-36
>>XP_006711966 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_006 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_006 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_016860757 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_016 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_005246241 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_005 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_005246242 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_005 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_016860756 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_016 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_011508718 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_011 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_011 QAICKVLSTAFDSVLTSEKP
190 200
>>NP_004754 (OMIM: 607153) integrin beta-1-binding prote (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_004 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
NP_004 QAICKVLSTAFDSVLTSEKP
190 200
>>NP_001305995 (OMIM: 607153) integrin beta-1-binding pr (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_001 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
NP_001 QAICKVLSTAFDSVLTSEKP
190 200
>>XP_005246240 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
XP_005 QAICKVLSTAFDSVLTSEKP
190 200
>>NP_001305997 (OMIM: 607153) integrin beta-1-binding pr (200 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_001 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
130 140 150 160 170 180
190 200
pF1KE1 QAICKVLSTAFDSVLTSEKP
::::::::::::::::::::
NP_001 QAICKVLSTAFDSVLTSEKP
190 200
200 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:01:55 2016 done: Sun Nov 6 23:01:55 2016
Total Scan time: 6.420 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]