FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1430, 282 aa
  1>>>pF1KE1430 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4904+/-0.000675; mu= 15.5487+/- 0.041
 mean_var=79.4595+/-15.585, 0's: 0 Z-trim(111.4): 8  B-trim: 0 in 0/51
 Lambda= 0.143880
 statistics sampled from 12362 (12366) to 12362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS11071.1 C1QBP gene_id:708|Hs108|chr17          ( 282) 1896 402.4 1.9e-112


>>CCDS11071.1 C1QBP gene_id:708|Hs108|chr17               (282 aa)
 initn: 1896 init1: 1896 opt: 1896  Z-score: 2132.3  bits: 402.4 E(32554): 1.9e-112
Smith-Waterman score: 1896; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE1 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM
              190       200       210       220       230       240

              250       260       270       280  
pF1KE1 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ
              250       260       270       280  




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:30:16 2016 done: Mon Nov  7 01:30:16 2016
 Total Scan time:  2.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]