Result of FASTA (omim) for
pFN21AE1423
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1423, 448 aa
1>>>pF1KE1423 448 - 448 aa - 448 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8660+/-0.000377; mu= 19.6511+/- 0.024
mean_var=58.9454+/-11.771, 0's: 0 Z-trim(111.7): 67 B-trim: 346 in 1/50
Lambda= 0.167051
statistics sampled from 20368 (20437) to 20368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.24), width: 16
Scan time: 8.600
The best scores are: opt bits E(85289)
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 3047 743.0 3.8e-214
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 2944 718.1 1.1e-206
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 2941 717.4 1.9e-206
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 2933 715.5 7.2e-206
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 2933 715.5 7.2e-206
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 2907 709.2 5.5e-204
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 2782 679.1 6.4e-195
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 2675 653.3 3.5e-187
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 2425 593.0 4.5e-169
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 1977 485.0 1.2e-136
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1296 321.0 4.1e-87
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1280 317.1 6e-86
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1280 317.1 6e-86
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1272 315.2 2.3e-85
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1267 314.0 5.2e-85
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1265 313.5 7.3e-85
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1261 312.5 1.4e-84
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 1261 312.5 1.4e-84
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 1261 312.5 1.4e-84
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 1261 312.5 1.5e-84
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 1261 312.5 1.6e-84
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 1239 307.2 5.8e-83
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1237 306.7 7.8e-83
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 1191 295.7 1.7e-79
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 1171 290.8 4.4e-78
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 1112 276.6 8.9e-74
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 1093 272.0 1.9e-72
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 1091 271.5 2.7e-72
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 1091 271.5 2.7e-72
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 1072 266.9 6.3e-71
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 1072 266.9 6.3e-71
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 1068 266.0 1.3e-70
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 1063 264.8 2.9e-70
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 1022 254.9 2.7e-67
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 1009 251.8 2.5e-66
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 1005 250.8 4.5e-66
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 914 228.8 1.7e-59
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 914 228.8 1.7e-59
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 829 208.4 3.2e-53
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 823 207.0 8.6e-53
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 798 200.8 4e-51
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 798 200.8 4e-51
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 736 185.9 1.2e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 549 140.9 6.6e-33
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 457 118.8 3.2e-26
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 438 114.1 5.2e-25
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 438 114.1 5.2e-25
XP_016866407 (OMIM: 607345) PREDICTED: tubulin eps ( 431) 417 109.1 2.4e-23
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 412 107.8 3.8e-23
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 412 107.8 3.8e-23
>>NP_005991 (OMIM: 191110,616208) tubulin alpha-4A chain (448 aa)
initn: 3047 init1: 3047 opt: 3047 Z-score: 3965.5 bits: 743.0 E(85289): 3.8e-214
Smith-Waterman score: 3047; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDEDEGEE
::::::::::::::::::::::::::::
NP_005 AREDMAALEKDYEEVGIDSYEDEDEGEE
430 440
>>NP_001265481 (OMIM: 191110,616208) tubulin alpha-4A ch (433 aa)
initn: 2944 init1: 2944 opt: 2944 Z-score: 3831.6 bits: 718.1 E(85289): 1.1e-206
Smith-Waterman score: 2944; 100.0% identity (100.0% similar) in 433 aa overlap (16-448:1-433)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
350 360 370 380 390 400
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDEDEGEE
::::::::::::::::::::::::::::
NP_001 AREDMAALEKDYEEVGIDSYEDEDEGEE
410 420 430
>>NP_006073 (OMIM: 602530) tubulin alpha-1B chain [Homo (451 aa)
initn: 2935 init1: 2935 opt: 2941 Z-score: 3827.4 bits: 717.4 E(85289): 1.9e-206
Smith-Waterman score: 2941; 96.4% identity (98.4% similar) in 450 aa overlap (1-448:1-450)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
:::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDE--DEGEE
::::::::::::::::.:: : : .::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_006000 (OMIM: 602529,611603) tubulin alpha-1A chain (451 aa)
initn: 2927 init1: 2927 opt: 2933 Z-score: 3817.0 bits: 715.5 E(85289): 7.2e-206
Smith-Waterman score: 2933; 96.0% identity (98.4% similar) in 450 aa overlap (1-448:1-450)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
:::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::.:::::.::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDE--DEGEE
::::::::::::::::.:: : : .::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_001257328 (OMIM: 602529,611603) tubulin alpha-1A ch (451 aa)
initn: 2927 init1: 2927 opt: 2933 Z-score: 3817.0 bits: 715.5 E(85289): 7.2e-206
Smith-Waterman score: 2933; 96.0% identity (98.4% similar) in 450 aa overlap (1-448:1-450)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_001 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
:::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_001 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::.:::::.::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDE--DEGEE
::::::::::::::::.:: : : .::::
NP_001 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain [Hom (450 aa)
initn: 2895 init1: 2895 opt: 2907 Z-score: 3783.2 bits: 709.2 E(85289): 5.5e-204
Smith-Waterman score: 2907; 94.4% identity (98.4% similar) in 449 aa overlap (1-448:1-449)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_005 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
::::::::::::::.::.:.: ::::::::::::::::::::::::::::::::.: :::
NP_005 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.: ::::::::.::::::::::::.:::::::::::::::::::.::::::::::
NP_005 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::::::.:::::.::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDE-DEGEE
::::.:::::::::::.:: : : .::::
NP_005 AREDLAALEKDYEEVGVDSVEAEAEEGEEY
430 440 450
>>NP_061816 (OMIM: 605742,613180) tubulin alpha-8 chain (449 aa)
initn: 2782 init1: 2782 opt: 2782 Z-score: 3620.4 bits: 679.1 E(85289): 6.4e-195
Smith-Waterman score: 2782; 90.0% identity (96.4% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KE1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
:::::::::::::::.:::::::.::::::: :: . .. . . :::::::: ::: ::
NP_061 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
NP_061 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_061 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_061 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
NP_061 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440
pF1KE1 AREDMAALEKDYEEVGIDSYEDEDEGEE
::::.::::::::::: ::.:.:.::::
NP_061 AREDLAALEKDYEEVGTDSFEEENEGEEF
430 440
>>NP_001257329 (OMIM: 602529,611603) tubulin alpha-1A ch (416 aa)
initn: 2669 init1: 2669 opt: 2675 Z-score: 3481.5 bits: 653.3 E(85289): 3.5e-187
Smith-Waterman score: 2675; 96.1% identity (98.3% similar) in 415 aa overlap (36-448:1-415)
10 20 30 40 50 60
pF1KE1 SVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRA
::::::::::::::.::: :::::::::::
NP_001 MPSDKTIGGGDDSFNTFFSETGAGKHVPRA
10 20 30
70 80 90 100 110 120
pF1KE1 VFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKL
::::::::::::.:.: :::::::::::::::::::::::::::::::::: ::::::::
NP_001 VFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 SDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE1 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE1 DPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPG
::::::::::::::::::::::::::::.:::::.:::::::::::::::::::::::::
NP_001 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE1 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
340 350 360 370 380 390
430 440
pF1KE1 AALEKDYEEVGIDSYEDE--DEGEE
:::::::::::.:: : : .::::
NP_001 AALEKDYEEVGVDSVEGEGEEEGEEY
400 410
>>NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 cha (383 aa)
initn: 2425 init1: 2425 opt: 2425 Z-score: 3156.4 bits: 593.0 E(85289): 4.5e-169
Smith-Waterman score: 2425; 92.7% identity (98.2% similar) in 381 aa overlap (68-448:2-382)
40 50 60 70 80 90
pF1KE1 SDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKE
.::::::.::.: : :::::::::::::::
NP_001 MIDLEPTVVDEVRAGTYRQLFHPEQLITGKE
10 20 30
100 110 120 130 140 150
pF1KE1 DAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERL
::::::::::::.::: :: ::::::::.: :.::::::.::::::::::::::::::::
NP_001 DAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
:.::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE1 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::.::::.::
NP_001 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE1 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKT
:::::::::::::::..:::: .::::::::::::::::.::::::::::::.:::::::
NP_001 AEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKT
220 230 240 250 260 270
340 350 360 370 380 390
pF1KE1 KRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
280 290 300 310 320 330
400 410 420 430 440
pF1KE1 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE
:::::::::::::::::::::::::::.::::::::::: ::.:.:.::::
NP_001 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
340 350 360 370 380
>>XP_016860313 (OMIM: 191110,616208) PREDICTED: tubulin (295 aa)
initn: 1977 init1: 1977 opt: 1977 Z-score: 2574.5 bits: 485.0 E(85289): 1.2e-136
Smith-Waterman score: 1977; 100.0% identity (100.0% similar) in 295 aa overlap (154-448:1-295)
130 140 150 160 170 180
pF1KE1 KLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE
::::::::::::::::::::::::::::::
XP_016 MERLSVDYGKKSKLEFSIYPAPQVSTAVVE
10 20 30
190 200 210 220 230 240
pF1KE1 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE1 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE1 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE1 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
220 230 240 250 260 270
430 440
pF1KE1 DMAALEKDYEEVGIDSYEDEDEGEE
:::::::::::::::::::::::::
XP_016 DMAALEKDYEEVGIDSYEDEDEGEE
280 290
448 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:07:02 2016 done: Sun Nov 6 23:07:04 2016
Total Scan time: 8.600 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]