FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1421, 482 aa
  1>>>pF1KE1421 482 - 482 aa - 482 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0094+/-0.000721; mu= 15.9885+/- 0.044
 mean_var=92.7496+/-18.762, 0's: 0 Z-trim(111.4): 6  B-trim: 105 in 1/50
 Lambda= 0.133174
 statistics sampled from 12367 (12370) to 12367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.38), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS14096.1 TYMP gene_id:1890|Hs108|chr22          ( 482) 3163 617.6 9.5e-177
CCDS58811.1 TYMP gene_id:1890|Hs108|chr22          ( 487) 3143 613.7 1.4e-175


>>CCDS14096.1 TYMP gene_id:1890|Hs108|chr22               (482 aa)
 initn: 3163 init1: 3163 opt: 3163  Z-score: 3286.7  bits: 617.6 E(32554): 9.5e-177
Smith-Waterman score: 3163; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)

               10        20        30        40        50        60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAELVLPP
              430       440       450       460       470       480

         
pF1KE1 QQ
       ::
CCDS14 QQ
         

>>CCDS58811.1 TYMP gene_id:1890|Hs108|chr22               (487 aa)
 initn: 3149 init1: 2530 opt: 3143  Z-score: 3265.9  bits: 613.7 E(32554): 1.4e-175
Smith-Waterman score: 3143; 99.0% identity (99.0% similar) in 487 aa overlap (1-482:1-487)

               10        20        30        40        50        60
pF1KE1 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAALMTPGTGAPPAPGDFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARAL
              310       320       330       340       350       360

              370       380            390       400       410     
pF1KE1 CSGSPAERRQLLPRAREQEELLAPAD-----GTVELVRALPLALVLHELGAGRSRAGEPL
       ::::::::::::::::::::::::::     :::::::::::::::::::::::::::::
CCDS58 CSGSPAERRQLLPRAREQEELLAPADAPLPAGTVELVRALPLALVLHELGAGRSRAGEPL
              370       380       390       400       410       420

         420       430       440       450       460       470     
pF1KE1 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAPFAAPSPFAE
              430       440       450       460       470       480

         480  
pF1KE1 LVLPPQQ
       :::::::
CCDS58 LVLPPQQ
              




482 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:42:15 2016 done: Mon Nov  7 15:42:16 2016
 Total Scan time:  3.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]