Result of FASTA (ccds) for
pFN21AE1414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1414, 224 aa
1>>>pF1KE1414 224 - 224 aa - 224 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1790+/-0.000652; mu= 15.2623+/- 0.039
mean_var=70.4982+/-13.885, 0's: 0 Z-trim(111.5): 8 B-trim: 0 in 0/53
Lambda= 0.152751
statistics sampled from 12423 (12427) to 12423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.382), width: 16
Scan time: 1.990
The best scores are: opt bits E(32554)
CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 1590 358.7 1.7e-99
CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 780 180.2 9.2e-46
CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 706 163.9 7.2e-41
CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 502 118.9 2.4e-27
>>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa)
initn: 1590 init1: 1590 opt: 1590 Z-score: 1899.6 bits: 358.7 E(32554): 1.7e-99
Smith-Waterman score: 1590; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTD
130 140 150 160 170 180
190 200 210 220
pF1KE1 WLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
::::::::::::::::::::::::::::::::::::::::::::
CCDS26 WLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
190 200 210 220
>>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa)
initn: 812 init1: 564 opt: 780 Z-score: 935.0 bits: 180.2 E(32554): 9.2e-46
Smith-Waterman score: 780; 50.0% identity (80.2% similar) in 212 aa overlap (14-224:14-220)
10 20 30 40 50 60
pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
:: : .:::: ..::::.:.:::: .:.. .::::: ::: : .
CCDS11 MGAAARTLRLALGLLLLATLLRP---ADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDS
10 20 30 40 50
70 80 90 100 110
pF1KE1 SADP-ADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ
. : .. : ..::::::::::: : ::...::: .:..:::.:.....:.::..:.
CCDS11 GNDIYGNPIKRIQYEIKQIKMFKGPE--KDIEFIYTAPSSAVCGVSLDVGGKKEYLIAGK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT
. .:::. : ::..: ::. :: .:..::::.:...: :.:: : .:: ::.:.::::
CCDS11 AEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWM
120 130 140 150 160 170
180 190 200 210 220
pF1KE1 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
::. :... :.::. ..:.:. ::.:.:::: : ..::.:: .:
CCDS11 DWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP
180 190 200 210 220
>>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa)
initn: 688 init1: 392 opt: 706 Z-score: 847.2 bits: 163.9 E(32554): 7.2e-41
Smith-Waterman score: 706; 47.4% identity (73.5% similar) in 215 aa overlap (11-224:4-211)
10 20 30 40 50
pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLG-EACSCAPAHPQQHICHSALVIRAKISSEKVVP
:. :. ::. : :::.:.:.:::. .:.: .:::::. ..:.:
CCDS13 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVK
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 ASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ
. : : : : :::.::..:: :. ::::.: . ::::.:::.: . ::::::.
CCDS13 EG--PFGT---LVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVN-KYQYLLTGR
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT
: :::.. :::..: :..:.: ::..::..:::.:.:.: .:: .:: ... ::::::
CCDS13 VY-DGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWT
110 120 130 140 150 160
180 190 200 210 220
pF1KE1 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
: : . :::..::.:... : :::::: : : ... ..:
CCDS13 DMLSNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
170 180 190 200 210
>>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa)
initn: 408 init1: 152 opt: 502 Z-score: 604.3 bits: 118.9 E(32554): 2.4e-27
Smith-Waterman score: 502; 37.4% identity (67.5% similar) in 206 aa overlap (7-207:6-199)
10 20 30 40 50 60
pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
: : .::: : :. : ..::.:.: ::: .:.: ::::::. . :
CCDS14 MAPFEPLASGILLL--LWLIAP---SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEV--
10 20 30 40 50
70 80 90 100 110
pF1KE1 SADPADTEKMLRYEIKQIKMFKGFEKV---KDVQYIYTPFDSSLCGVKLEA-NSQKQYLL
.: . :::::. ::.:::. . :....::: :.:: .. : ....:.
CCDS14 ----NQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLI
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 TGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCG-CQITTCYTVPCTISAPNE
.:. :.:: . : :... ::..:::.::..... : ..: : . : ..:: ... ..
CCDS14 AGK-LQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTH
110 120 130 140 150 160
180 190 200 210 220
pF1KE1 CLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
::::: ::. . :.:..: .:. . : :.:
CCDS14 CLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA
170 180 190 200
224 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:32:08 2016 done: Mon Nov 7 15:32:08 2016
Total Scan time: 1.990 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]