FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1411, 199 aa
  1>>>pF1KE1411 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9243+/-0.000741; mu= 10.2721+/- 0.044
 mean_var=67.8207+/-13.496, 0's: 0 Z-trim(108.7): 20  B-trim: 0 in 0/50
 Lambda= 0.155738
 statistics sampled from 10394 (10405) to 10394 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS9048.1 CRADD gene_id:8738|Hs108|chr12          ( 199) 1308 302.3 1.3e-82
CCDS81719.1 CRADD gene_id:8738|Hs108|chr12         ( 130)  636 151.2 2.5e-37
CCDS81720.1 CRADD gene_id:8738|Hs108|chr12         ( 115)  628 149.4 7.7e-37
CCDS81722.1 CRADD gene_id:8738|Hs108|chr12         ( 121)  628 149.4 8.1e-37


>>CCDS9048.1 CRADD gene_id:8738|Hs108|chr12               (199 aa)
 initn: 1308 init1: 1308 opt: 1308  Z-score: 1596.6  bits: 302.3 E(32554): 1.3e-82
Smith-Waterman score: 1308; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSL
              130       140       150       160       170       180

              190         
pF1KE1 HNGLRAVEVDPSLLLHMLE
       :::::::::::::::::::
CCDS90 HNGLRAVEVDPSLLLHMLE
              190         

>>CCDS81719.1 CRADD gene_id:8738|Hs108|chr12              (130 aa)
 initn: 636 init1: 636 opt: 636  Z-score: 783.7  bits: 151.2 E(32554): 2.5e-37
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE1 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQI
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS81 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGLEEKGRTGRRMGWGAGEEKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSL
                                                                   
CCDS81 QKCQTVGMRT                                                  
              130                                                  

>>CCDS81720.1 CRADD gene_id:8738|Hs108|chr12              (115 aa)
 initn: 628 init1: 628 opt: 628  Z-score: 774.9  bits: 149.4 E(32554): 7.7e-37
Smith-Waterman score: 628; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE1 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQI
       :::::::::::::::::::::::::::::::::::::::                     
CCDS81 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAVAIIRLPRELSLPTLL     
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE1 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSL

>>CCDS81722.1 CRADD gene_id:8738|Hs108|chr12              (121 aa)
 initn: 628 init1: 628 opt: 628  Z-score: 774.5  bits: 149.4 E(32554): 8.1e-37
Smith-Waterman score: 628; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE1 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQI
       :::::::::::::::::::::::::::::::::::::::                     
CCDS81 LPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAEMRKLRPKDSVTCLASQLTWR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSL
                                                                   
CCDS81 F                                                           
                                                                   




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:06:54 2016 done: Mon Nov  7 01:06:54 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]